Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 256 a.a., ABC-2 type transporter (RefSeq) from Shewanella sp. ANA-3

 Score =  101 bits (252), Expect = 1e-26
 Identities = 63/252 (25%), Positives = 128/252 (50%), Gaps = 10/252 (3%)

Query: 3   AFSAMFYRQLRRFTRA--KSRVIGSLLNPLVWLVFFGIGWSRAFDFPAAREIFGGVDYLT 60
           AF ++  +++ RFTR   ++ V  ++   L +L+F  +  SR  D        GGV Y+ 
Sbjct: 8   AFKSILTKEINRFTRIWIQTLVPPAITMTLYFLIFGNLVGSRIGDM-------GGVSYME 60

Query: 61  YLIPGVVSMTVFSGSFISGVTVIWDKQFGF-LKETLVAPTSRSEAILGRIMGDSITALIQ 119
           ++ PG++ M+V + S+ +  +  +  +F   L+E +VAP      I G + G     L  
Sbjct: 61  FIAPGLIMMSVITNSYSNVASSFYSAKFQRNLEELMVAPVPHYVMIAGYVGGGVARGLCV 120

Query: 120 GVLIMVLSLFLVSLNPFGMIPVIFTSFILAVAFASVGISLGLKINSQEGFHLIFGLLMQP 179
           G+++ ++++F V ++      V+ T F+ +V F+  G+   +   S +   +I   ++ P
Sbjct: 121 GLIVTLVAMFFVDISLHHAGLVVMTVFLTSVLFSLGGLINAVFAKSFDDISIIPTFVLTP 180

Query: 180 LIFLSGAFYPIDAMPTWMKILAYINPLTYAVDSARYFLAGFSRFPIMLDVSILIVLSVFL 239
           L +L G FY +  +P++ + ++ +NP+ Y ++  RY   GF+   I L + I++     L
Sbjct: 181 LTYLGGVFYSLSLLPSFWQGVSALNPVVYMINVFRYGFLGFADISIPLSIGIMVGFCAVL 240

Query: 240 VVLAMYTFEKAV 251
             +A Y   + +
Sbjct: 241 WGVAYYLISRGI 252