Pairwise Alignments

Query, 386 a.a., homocitrate synthase family protein from Methanococcus maripaludis S2

Subject, 522 a.a., 2-isopropylmalate synthase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  224 bits (570), Expect = 6e-63
 Identities = 134/352 (38%), Positives = 204/352 (57%), Gaps = 14/352 (3%)

Query: 20  LYDTTLRDGEQTPGVCFAGDQKLEIAKKLDELKIKQIEAGFPIVSENERKAIKSITGEGL 79
           ++DTTLRDGEQ      +  +KL+IA  L+ L +  +E GFP+ S  + +++++I     
Sbjct: 7   IFDTTLRDGEQALAASLSVKEKLQIAMALERLGVDVMEVGFPVSSPGDFESVQTIARTIK 66

Query: 80  NAQILALSRVLKEDIDKAIEC----DVDGIITFIATSPMHLKYKLHKNLDEVEEMGMKAV 135
           N+++ ALSR L++DID A +     +   I TFI+TS +H++ KL ++ ++V EM + AV
Sbjct: 67  NSRVCALSRALEKDIDAAAQALSVAEQFRIHTFISTSTIHVESKLKRSFEQVLEMAVGAV 126

Query: 136 EYAKDHGLFVAFSAEDATRTPLEDIIRIHKNAEEHGADRVHIADTLGCATPQAMYHICSE 195
           +YA+     V FS EDA RTP++++ R+ + A   GA  ++I DT+G   P     I   
Sbjct: 127 KYARRFTDDVEFSCEDAGRTPIDNLCRMVEAAIHAGARTINIPDTVGYTVPSEFGSIIQT 186

Query: 196 LSK---HLKKAHIGVHCHNDFGFAVINSIYGLIGGAKAVSTTVNGIGERAGNAAIEEIAM 252
           L     ++ +A I VHCH+D G +V NSI  +  GA+ +  T+NGIGERAGN ++EEIAM
Sbjct: 187 LFNRVPNIDQAIISVHCHDDLGLSVANSITAVQHGARQIECTMNGIGERAGNCSLEEIAM 246

Query: 253 AL---KVLYDHDMGLNTEILTEISKLVENYSKIKIPENKPLVGEMVFYHESGIHVDAVLE 309
            L   K L   + G+N + +   S LV     + I  NK +VG   F H SGIH D +L+
Sbjct: 247 ILATRKNLLGFETGINAKEIHRTSNLVSQLCNMPIQSNKAIVGANAFTHSSGIHQDGMLK 306

Query: 310 NPLTYEPFLPEKIGQKR-KIILGKHSGCRAVAHRLQELGLEA---SRDELWE 357
              TYE   PE IG  R  + +   SG   + HR++E+G  +   + D L+E
Sbjct: 307 AQNTYEIMTPESIGLNRNNLNMTSRSGRHVIKHRMEEMGYSSQDYNLDALYE 358