Pairwise Alignments

Query, 446 a.a., SLC13 family permease from Methanococcus maripaludis S2

Subject, 575 a.a., TrkA domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  100 bits (250), Expect = 9e-26
 Identities = 55/195 (28%), Positives = 99/195 (50%), Gaps = 4/195 (2%)

Query: 255 KMWIATLVFTFVVLMTATGTIPLVTAFMLGACMVVMTGCITMQEAFNSISWTTIFLFAGM 314
           K WI+   F   +++ ATG + ++   +L   +++ T C+ + E           + A  
Sbjct: 382 KAWISIGGFVLTLVLAATGVVEMLQGMLLLLGVLIFTQCLNVNEVVRRFPVDIWLVVASA 441

Query: 315 LPLGSAMAATGAATMIANTV---ITYVHSPLALLAAAYILTALITEVMSNTATAALVMPL 371
           + L  A+  +G A ++A+ V       H  LALL   Y+ T L+TE+++N A AAL+ P+
Sbjct: 442 ILLSHALVNSGVAELVASWVEGTAEKEHLMLALLLV-YLATWLMTELITNNAAAALMFPI 500

Query: 372 GIALADAFDVSAKPILMAIAVAASSCFLTPIATPPNMIILGPGGYSFKDYAKSGWPLEIL 431
             ++A  F V   P +M +A AAS  F++P     N+++   G Y   D+ K G P+ + 
Sbjct: 501 AYSIALGFGVDFLPFVMTVAFAASGSFISPYGYQTNLMVYNAGRYRLMDFVKVGVPVSLT 560

Query: 432 CAVVAIAVIPMIWPF 446
              + +  +P+ +PF
Sbjct: 561 YGAIVLLTVPLFFPF 575



 Score = 58.2 bits (139), Expect = 7e-13
 Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 10/196 (5%)

Query: 41  IILGTAAVLFFTEALPLPVTAMLVPVALSFPGIDILSSSRAFADFGNKWVVLFMAAFILG 100
           I L T   L   +  P  V  + + V ++F   ++++  +  +   N  +V  +   +  
Sbjct: 11  IFLATIVGLVRFQNRPALVFGVTLLVLVAF---NLVTKEQLLSSMSNPGLVTLVLLILCS 67

Query: 101 EAVFRTGFADKIGQLTVKAAGKSQLKLMLLVMLAIGTMSAFLSNTGTTAAFIPIVMGICV 160
            A+ +T     I    +  +G     L L  M A+   SA L+NT   A  +  +     
Sbjct: 68  FALEKTRLLRVIAAKVI-VSGYRTTWLRLYGMTALS--SALLNNTAVVATLLSPIRN--- 121

Query: 161 SASLKPGKLLIPMAYAASLGGTLTLIGTPPNGLVNDALEKSGIAPFGFFEFAKIGILIFI 220
           +      KLL+P++YAA LGGTLTL+GT  N +VN  +  +      FF F  IG L+ +
Sbjct: 122 NPHHVASKLLLPLSYAAILGGTLTLVGTSTNLIVNSMVIDASNQSLSFFSFTAIGALL-V 180

Query: 221 VGILYYGTIGHKLLPE 236
           +G      I  + LP+
Sbjct: 181 LGCGLVLRIASRWLPD 196



 Score = 43.1 bits (100), Expect = 2e-08
 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 13/142 (9%)

Query: 89  WVVLFMAAFILGEAVFRTGFADKIGQLTVKAAGKSQLKL-MLLVMLAIGTMSAFLSNTGT 147
           W+V+  +A +L  A+  +G A+ +       A K  L L +LLV LA   M+  ++N   
Sbjct: 435 WLVV-ASAILLSHALVNSGVAELVASWVEGTAEKEHLMLALLLVYLATWLMTELITNNAA 493

Query: 148 TAAFIPIVMGICVSASLKPGKLLIPMAYAASLGGTLTLIGTPPNGLVNDALEKSGIAPFG 207
            A   PI   I +   +     ++ +A+AAS G  ++  G   N +V +A        + 
Sbjct: 494 AALMFPIAYSIALGFGVDFLPFVMTVAFAAS-GSFISPYGYQTNLMVYNA------GRYR 546

Query: 208 FFEFAKIGILIFIVGILYYGTI 229
             +F K+G+ +     L YG I
Sbjct: 547 LMDFVKVGVPV----SLTYGAI 564