Pairwise Alignments

Query, 636 a.a., acetate--CoA ligase from Methanococcus maripaludis S2

Subject, 662 a.a., AMP-dependent synthetase and ligase (RefSeq) from Shewanella loihica PV-4

 Score =  446 bits (1148), Expect = e-129
 Identities = 248/638 (38%), Positives = 372/638 (58%), Gaps = 20/638 (3%)

Query: 9   MLEKYSELQQKALDDPEKFWGEQAKCLEWDKTWDKALDWNP-PYAKWFKGGSLNASYNCV 67
           M + +++L Q+++D+P  FWGE A  L WDKT+++ LD +  P  +WF GG LN  YN V
Sbjct: 29  MKDLHNQLHQESIDNPNAFWGEAAGALAWDKTFERVLDDSQAPMYRWFSGGQLNTCYNAV 88

Query: 68  DRHIKGNRRNKAAI-----ICEKEDGSCGILTYYELYREVNKFANVLENLGVEKGDVVTI 122
           DRH++  R  + AI     I   E G    +TY EL  +V++ A  + + GV KGD V I
Sbjct: 89  DRHVEAGRGEQVAIQYVSPITGTEYG----ITYNELQAQVSRLAGYMASQGVVKGDRVII 144

Query: 123 YMPMMTEAIIAMLACSRIGAIHNVVFSGFSSDALADRINDSKSKILVTTNLLYRRGKEID 182
           YMPM+ E   AMLAC+R+GAIH+VVF GF+++ LA RI+D+  K++++ +        + 
Sbjct: 145 YMPMVPETAYAMLACARLGAIHSVVFGGFAANELATRIDDATPKMILSASCGVEPSGVVA 204

Query: 183 LKKILDKALLNCN-SIKHVVYAKRGIEEFNLVSGKEYFWDELMGGAKSYVEPVPVESEHP 241
            K +LD AL   +  ++  V   R   + +LV G++  W   M  A + +E   VE+  P
Sbjct: 205 YKPLLDDALEQASHKVEQCVILNRPQLQADLVDGRDVDWQGAMADAPN-IECQTVEATDP 263

Query: 242 LFILYTSGTTGSPKGVVHSTGGYLTYATKTMDWTWGLNEMDVFWCTADIGWITGHTYVVY 301
           L+ILYTSGTTG PKGVV   GG+      +M   + ++  DVFW  +D+GW+ GH+Y+VY
Sbjct: 264 LYILYTSGTTGQPKGVVRDNGGHAVALAWSMKHIYDIDPGDVFWAASDVGWVVGHSYIVY 323

Query: 302 GPLSLGATIVLYEG-AIDYPEPDRLWGIVENHGVTILYTAPTAIRMLMMYGEK--WVNTH 358
           GPL +GAT VL+EG  +  P+P   W  +  + V   +TAPTAIR +     +  ++   
Sbjct: 324 GPLLVGATTVLFEGKPVGTPDPGIFWRTIAKYNVKSFFTAPTAIRAIKRDDPEGDYLKDV 383

Query: 359 DLSTLRLLGSVGEPINPRAWKWYYKVIGKEKCPICDCYWQTETGGHIIYPPIGIQSVPLK 418
           DLS L  L   GE  +P    W  + + K   P+ D +WQTETG  +    +G   VP+K
Sbjct: 384 DLSCLGTLFLAGERCDPDTLHWAEQQLDK---PVIDHWWQTETGWPVAANLMGTAPVPVK 440

Query: 419 PGSATFPGIGIDVDVVDNEGNPVDANVKGNLIIKRPW-PGMLAGLWNNDERYRAAYWDRF 477
            GS      G DV V+D  G+ V  +  GN++IK P  PG LA LW N+ RY+ +Y   +
Sbjct: 441 AGSPAKAVPGYDVQVLDEMGDVVAPDQSGNVVIKLPLPPGTLATLWQNEGRYKESYLSMY 500

Query: 478 KNKFSTSDYAIKDQDGYIWVLGRSDEVLNVSGHRIGTAELEHELVSNKMVAESAVVGKPD 537
              + T D    D+DGY++++ R D+++NV+GHR+ T   E  L  ++ VAE+AV+G  D
Sbjct: 501 PGYYLTGDAGYMDEDGYLYIMSRIDDIINVAGHRLSTGRFEEVLCQHEAVAEAAVIGVDD 560

Query: 538 DVKGEVPVAFVILNEKYRELPSNEVKAELIKHIRDTVGPIGTPAMIFFVNKLPKTRSGKI 597
            +KG+VP+  V+L +K  +L   ++  ELI  +R+ +GP+    ++  V KLPKTRSGKI
Sbjct: 561 KLKGQVPLGLVVL-KKGCDLSDEQLYKELIALVREQIGPVAAFKLVSAVPKLPKTRSGKI 619

Query: 598 MRRILKKLIMGEEIGDVTTLEDNTSLEEVKKELEDFKY 635
           +R  ++K+   +E     T+ED  +LE V+  L    Y
Sbjct: 620 LRGTMRKIADNQEFKMPATIEDPYTLELVRNALTRMGY 657