Pairwise Alignments

Query, 290 a.a., topoisomerase DNA-binding C4 zinc finger domain-containing protein from Methanococcus maripaludis S2

Subject, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis JJ

 Score = 47.0 bits (110), Expect = 1e-09
 Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 21/103 (20%)

Query: 201 DCDLTIDL----------ENTEVFENYLIYVDTVNSVVRYNGERLCTSGYSLAEELKKH- 249
           DC++T  L          E  E  +N +I +D +   V  +    C++   ++EE KK  
Sbjct: 621 DCEVTFPLPQKGRIKVLNEVCEKCQNPVIGLDRIKICVNPD----CST--RISEEDKKEI 674

Query: 250 ----SDENTCPWCGEKLRLIKTKKGEFLGCSSYPKCLYRRFLN 288
                +E  CP CG KL + K   G F GC +YPKC Y   LN
Sbjct: 675 EKAEKEEKICPKCGNKLLIKKGPYGVFRGCENYPKCKYTEKLN 717



 Score = 44.7 bits (104), Expect = 7e-09
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 244 EELKKHSDENT----CPWCGEKLRLIKTKKGEFLGCSSYPKCLYRRFLNKK 290
           E+L   S+E      CP CG  L   K + GEF+GCS+YPKC +   ++KK
Sbjct: 714 EKLNGESNEKEIVGKCPKCGSDLYKRKGRFGEFIGCSNYPKCRHTEKIDKK 764



 Score = 31.2 bits (69), Expect = 8e-05
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)

Query: 258 CGEKLRLIKTK-KGEFLGCSSYPKC 281
           CG  + +I+TK K  F+GCS+YP C
Sbjct: 598 CGGDMIIIRTKGKKRFVGCSNYPDC 622