Pairwise Alignments

Query, 771 a.a., carbamoyltransferase HypF from Methanococcus maripaludis S2

Subject, 781 a.a., (NiFe) hydrogenase maturation protein HypF (RefSeq) from Shewanella loihica PV-4

 Score =  367 bits (943), Expect = e-105
 Identities = 257/788 (32%), Positives = 399/788 (50%), Gaps = 52/788 (6%)

Query: 5   RIDVKGIVQGVGFRPFIYRIAKKNDLKGYVKNMGNYVEIVVSGKLNNIDAFLSDLKLEKP 64
           R+ V GIVQGVGFRPF+YR A +  L G   N    V + + G    I AF+  L    P
Sbjct: 8   RLAVTGIVQGVGFRPFVYRWATELGLLGLTFNHSKGVTVELQGSDAAIHAFVEALTQTPP 67

Query: 65  PLSKIDNISIEDIDENE-NLNEIYGDFTIKLSDTSKIEEEGTIPPDISICDECLKEIMDK 123
           PL++ID++S  ++   E N  EI       +   +  +    +  D S C ECL EIMD 
Sbjct: 68  PLARIDSLSQTELPLEECNSFEI-------VHSQADAKAVVAVSSDKSSCQECLDEIMDP 120

Query: 124 KDRRSDYAFTACTNCGPRFTVIEKLPYDRENTSMKDFPLCKSCIEEYKNPEDRRFHAQAT 183
            +R   Y FT CTNCGPR+T+I  LPYDR NT+M +F +C +C   Y+NP DRR+HAQ  
Sbjct: 121 GNRHYQYPFTNCTNCGPRYTLIRALPYDRPNTAMAEFAMCDACAAAYQNPLDRRYHAQPV 180

Query: 184 CCDICGPELFITDDSGKIIS--NDICD-AVKFLEEGKILAIKGIGGTHLVCSINSDKSVL 240
            C  CGP+L + D     ++  N   D AV+ L +GK LAIKG+GG HLVC   + ++V+
Sbjct: 181 SCPDCGPQLSLLDAQQIPLAEKNAALDLAVELLAQGKTLAIKGLGGFHLVCDATNHEAVM 240

Query: 241 ELRKRLNRPTQAFAIMSRE-EYLDLFSKIDENELNMIKSPKKPIV----ALKKNELYEKY 295
           +LR R  RP + FA+M          +   + E  +++S ++PI     AL K+E     
Sbjct: 241 QLRSRKQRPAKPFAVMCASLPMAKTLACGSDAEWQLLQSAERPITLLQRALNKDESSSDA 300

Query: 296 FSEHV------SNLNTIGVMLPYSGLHYLLFENTDQIAYIMTSANLPGLPMSIDNEQILE 349
            S +V        ++ +G+ LPY+ LH LL    ++   + TSAN  G P+    EQI E
Sbjct: 301 LSSYVLSPAVAPGIDRLGLFLPYTPLHQLLLSRLNR-PLVATSANRSGEPIITHAEQIFE 359

Query: 350 KLENIADYFLLHNRKIVNRCDDSVLKEINGKMELLRRSRGFA------PEPVEVNYKKIK 403
           +L  + D  L HNR+I+N CDDSV++ ++ K++++R +RG+A      PE V      + 
Sbjct: 360 RLGEVVDAVLDHNREILNGCDDSVVQMVDDKLQVIRLARGYAPLTLALPEEVPQETLAVG 419

Query: 404 NNSKNILALGPELNSVACLVKNNKFYLTQYIGNTGKYETFNYLKDAVENLIKITNTNKID 463
              KN +A G + N V          L+ +IG+    E   Y  D +    ++   +   
Sbjct: 420 AQQKNSIAFGFDHNLV----------LSPHIGDLFSLEAEQYFIDTLATFKRLYQFSP-K 468

Query: 464 AIVCDLHPSFNSTIFAKELGEKYKIPVTQVQHHESHCHSLMGDSDIFENNVTIAIDGLGY 523
            +V D HP + STI+A++  +   I  TQVQHH +H  S+M  +   +  +  + DG G 
Sbjct: 469 HLVSDKHPDYASTIWAQQQKDAQGIAYTQVQHHYAHILSVMAVNQRVDKVLGFSFDGTGL 528

Query: 524 GNDGNIWGGEVFLFKNGKIERAGHLEEQIQPGADLASKYPLRMLASILNKANLNVSEIIK 583
           G++  +WGGE  L      +R  HL      G + A K P R++ ++L  A  +  E IK
Sbjct: 529 GDERQLWGGEAMLADISGFKRVAHLSPMALIGGEQAIKDPRRIMLALL-FARYSPDE-IK 586

Query: 584 GYNYFSEKELKLILF-----QLEKNINVSKTTSTGRVLDSISALVSLCFERTYDGEPSIR 638
                S +EL   L         K + +  T+S GR+ D+ + L+ L     ++G+  + 
Sbjct: 587 ALPLASLEELPASLIGNLHTLWHKGVAIQMTSSIGRLFDATACLLGLMQTTQFEGQAGML 646

Query: 639 LEALANEYTGEISEIEKLVEE---SIKIENNILDTTSLVVKSLE-MLNNNEKIEKIAYFI 694
           +EA ANE +    E E    +   S+   + +    SL  + ++ +L   +K E I+  I
Sbjct: 647 IEAKANEVSEAQLESELAAADLAFSLCEIDGVWQLASLWEQMVDALLKWQDKPEGIS-LI 705

Query: 695 HIAIADGLSKIAIETAKKQSIEYIGITGGVSYNKIISERIVENIKKESLKPLIHKRIPNG 754
                + L++   + A K S   + + GGV  N+ +     + ++   +K L   ++P  
Sbjct: 706 ARGFMNALAQAVTDCAIKHSGFDVALCGGVFQNRYLLSETRKRLEMAKIKVLDSHQVPVN 765

Query: 755 DGGISFGQ 762
           DGGI+ GQ
Sbjct: 766 DGGIALGQ 773