Pairwise Alignments

Query, 771 a.a., carbamoyltransferase HypF from Methanococcus maripaludis S2

Subject, 808 a.a., hydrogenase maturation protein HypF (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  342 bits (878), Expect = 4e-98
 Identities = 243/814 (29%), Positives = 409/814 (50%), Gaps = 79/814 (9%)

Query: 4   KRIDVKGIVQGVGFRPFIYRIAKKNDLKGYVKNMGNYVEIVVSGKLNNIDAFLSDLKLEK 63
           +++ + GIVQGVGFRPF+YR A +  L G V N    V I + G    +D F+ +L    
Sbjct: 5   RQLHITGIVQGVGFRPFVYRWATELQLTGTVLNNAKGVMIELQGPSARLDIFIQELATNP 64

Query: 64  PPLSKIDNISIEDIDENENLNEIYGDFTIKLSDT------SKIEEEGT----------IP 107
           PPL++ID+IS             +G   IKL++T      S  + +GT          + 
Sbjct: 65  PPLARIDHIS-------------HGQLAIKLAETHFEIVQSDSQSDGTKDRSLAALVAVS 111

Query: 108 PDISICDECLKEIMDKKDRRSDYAFTACTNCGPRFTVIEKLPYDRENTSMKDFPLCKSCI 167
            D S C +CL ++ + +DR   YAFT CTNCGPR+++I  LPYDR +T+M DF +C  C 
Sbjct: 112 ADKSTCQDCLDDMHNPQDRHFGYAFTNCTNCGPRYSIINALPYDRHHTAMADFAMCPDCA 171

Query: 168 EEYKNPEDRRFHAQATCCDICGPELFITDDSGKII-------SND-----ICDAVKFLEE 215
           + Y++P +RR+HAQ   C  CGP+L +    G++I       S D     +  A   L +
Sbjct: 172 KAYQDPLNRRYHAQPVSCPKCGPQLSLKTPKGELIALTPSLNSQDNSMAVLSAAANMLAQ 231

Query: 216 GKILAIKGIGGTHLVCSINSDKSVLELRKRLNRPTQAFAIMSRE-EYLDLFSKIDENELN 274
           G ILAIKG+GG HL+C   +  +V +LR+R  R  +  A+M    E    +    E E  
Sbjct: 232 GHILAIKGLGGFHLMCDARNSHAVSQLRQRKQRKAKPLAVMMPSIEMAKQYVTGTEAEWQ 291

Query: 275 MIKSPKKPIVALKKNELYEKYFSEHVSNLNTIGVMLPYSGLHYLLFENTDQIAYIMTSAN 334
            + SP++PIV ++  + ++    E   N+  +GV LPY+ LH+LL    +    + TSAN
Sbjct: 292 TLSSPERPIVLMQALDEHD-LNPEIAPNIPKLGVFLPYTPLHHLLLSQFNG-PLVATSAN 349

Query: 335 LPGLPMSIDNEQILEKLENIADYFLLHNRKIVNRCDDSVLKEI---NG---KMELLRRSR 388
           + G P+  D + ++ +L ++ D  + HNR I+N CDDSV++ I   NG   ++++LR +R
Sbjct: 350 VSGEPIITDCDALISQLGHVVDAIVDHNRPILNGCDDSVVQLIQQPNGSTPQVQVLRLAR 409

Query: 389 GFAPEPVEVNYKKIKNNSKNILALGPELNSVACLVKNNKFYLTQYIGNTGKYETFNYLKD 448
           G+AP    +++      +++ILA+G +  +          +L+ +IG+        Y + 
Sbjct: 410 GYAP----LSFPLTAPLTRSILAVGAQQKNAIAFGFGANVFLSPHIGDLFSVSAEQYFER 465

Query: 449 AVENLIKITNTNKIDAIVCDLHPSFNSTIFAK---------ELGEKYKIPVTQVQHHESH 499
            +    ++ + +  + IV D HP +  + +A+         + G    I    VQHH +H
Sbjct: 466 TLATFARLYHFSP-ELIVHDKHPDYAPSRWAEAQQQKSPDTQSGTSGSIQTLSVQHHHAH 524

Query: 500 CHSLMGDSDIFENNVTIAIDGLGYGNDGNIWGGEVFLFKNGKIERAGHLEEQIQPGADLA 559
             S+M  +   E  +  + DG G G+DG++WGGEV L +  K ER  H E     G + A
Sbjct: 525 VLSVMAINQYQEPVLGFSFDGTGLGDDGSLWGGEVLLTRLDKAERLAHFEAISLLGGEQA 584

Query: 560 SKYPLRMLASIL-NKANLNVSEIIKGYNYFSEKELKLI-LFQLEKNINVSKTTSTGRVLD 617
            K P+R+L ++L  + +L   + +      S   + L  L ++ +N +  K++S GR+ D
Sbjct: 585 IKQPVRLLLALLFEQMSLAAVQALDLPILKSLTPITLSNLHRIWQNGHTIKSSSVGRLFD 644

Query: 618 SISALVSLCFERTYDGEPSIRLEALANEYTGE-----ISEIEKLVEESIKIENNILDTT- 671
           +++  + L     ++G+  + +EA A     +     I ++     E    +  +  ++ 
Sbjct: 645 ALACALGLIDTTQFEGQAGMLIEAAARRADKQHLPSLILDLPLCSSEDDPRQVQVWCSSQ 704

Query: 672 ---SLVVKSLEMLNNNEKIEKIAYFIHIAIADGLSKIAIETAKKQSIEYIGITGGVSYNK 728
               L+V   E   ++ +   IA     ++ D +   A   A+  S+  I + GGV  N+
Sbjct: 705 LFKQLIVHITEAPLSSHRQSIIARAFLHSLGDAICSYA---ARYPSLP-IALCGGVFQNQ 760

Query: 729 IISERIVENIKKESLKPLIHKRIPNGDGGISFGQ 762
            + E  +  +  +    L +K IP  DGGI+ GQ
Sbjct: 761 YLLEYCLSKLHLQGNIVLPNKHIPVNDGGIALGQ 794