Pairwise Alignments

Query, 375 a.a., Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain from Methanococcus maripaludis S2

Subject, 359 a.a., Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain from Methanococcus maripaludis JJ

 Score = 81.6 bits (200), Expect = 3e-20
 Identities = 70/240 (29%), Positives = 119/240 (49%), Gaps = 16/240 (6%)

Query: 4   YLVQSTDEDILKHAECGGAVTAFFKYLLDKKLVDGVLALKKGEDVYDGLPYLVNDSKELV 63
           Y  +ST E   K+ + GG VTA      D+ L+DG + + + +   D   YL    ++++
Sbjct: 104 YKAKSTLET--KNIQSGGVVTAILANAFDEDLIDGAIVMMEDKWTMDPKSYLATSKEDVL 161

Query: 64  ETCGSLH--CAPTMFGNMISKHLKDMN-LAVSVKPCDAMAIVELEKRHQ-----IDKDKL 115
           +T GS +    P +     +  +K +N +AV   PC   A+ ++   +        K   
Sbjct: 162 KTAGSRYNWNVPILEVLKEAVMVKKLNKIAVVGTPCVINAVYQMMATNNDLVEPFKKAIR 221

Query: 116 YTIGLNCGGTVP-PQTAKKMIELFYDVDPEDVIKEEIDKGKFIIELKDGSEKSVKIDELE 174
             I L C  T    +  KK+ E+  +V+P D+ K EIDKGK I+    G+  + KIDE++
Sbjct: 222 LKISLFCFETFDYDKMLKKLKEV--EVNPWDIKKMEIDKGKLIVSTIHGNVFNFKIDEMD 279

Query: 175 EEGYGRRTNCQRCELKVPRNSDLACGNWGTEKGWTFVEVGSEKGEELLKNAQKEGYINVK 234
           E  Y R+  C+ C      +SD++ GN GT +G++ V V ++ G+         GY++V+
Sbjct: 280 E--YVRK-GCKVCRDFTGISSDISVGNVGTPEGYSTVLVRNKWGKGFFDRTVINGYVSVE 336



 Score = 29.3 bits (64), Expect = 2e-04
 Identities = 23/81 (28%), Positives = 29/81 (35%), Gaps = 20/81 (24%)

Query: 274 DEYWSR--CIKCYGCRDVCP---ICF---------CKECALGEDYLDKGTIPPDPIMFQG 319
           +E W R  C  C  C  VCP   I F         C ECA      + G  P        
Sbjct: 9   EEVWDRETCSGCGACVSVCPTENIYFKQQSPVQFDCDECACIIVPTENGESPISA----- 63

Query: 320 IRLSHMSFSCINCGQCEDVCP 340
                ++   +NCG C + CP
Sbjct: 64  -EFCKVTLYDVNCGACYNACP 83



 Score = 26.2 bits (56), Expect = 0.001
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 4/30 (13%)

Query: 328 SCINCGQCEDVCPVEIPLAKIYHRAQLKIR 357
           +C  CG C  VCP E     IY + Q  ++
Sbjct: 16  TCSGCGACVSVCPTE----NIYFKQQSPVQ 41