Pairwise Alignments

Query, 341 a.a., 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB from Methanococcus maripaludis S2

Subject, 372 a.a., radical SAM domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 45.8 bits (107), Expect = 2e-09
 Identities = 75/312 (24%), Positives = 128/312 (41%), Gaps = 41/312 (13%)

Query: 57  KTEIEITSTVHVTNICSVNPKCKYCGFAAGTSSEGY--VKPFRS-----DDDQIKSSSVA 109
           +T   +   V+ TNIC VN  C +C F      +G   + P        DD  +  S V 
Sbjct: 57  RTYYVVNRQVNYTNIC-VNG-CLFCAFQRERGQQGAFALTPDEMVARVMDDGGVPFSEVH 114

Query: 110 IENSG------------IKRVSCSSGHGYNGKEVIRALKAVKSASNLEVLVNAGADLTEE 157
           I                I+R+     H      V++A  AV+ A   ++   AG D TEE
Sbjct: 115 IVGGCHPDLPLEWFEDVIRRI-----HAARPSIVVKAFTAVEIAHFAKL---AGID-TEE 165

Query: 158 CILELKKYKIDTICCN-LETTNKTVFNNVKPGE-NLEDRINVCKMVKKHGVELSSGLLIG 215
            +  LK   +  +     E     V   + P + + E  + V     + G+  +  +L G
Sbjct: 166 VLRRLKAAGLSQLPGGGAEIFAPDVRQRICPRKIDAEAWLRVAGEAHRLGIGTNCTMLFG 225

Query: 216 IGETYEDRVEHLFFLKELDVEE--------IPIMGFNPYKETPMETCPKCSAIEQAKTIA 267
             E+  DRV+HL  L+    E         +P +  N   + P E   +   +++ +T+A
Sbjct: 226 HLESEADRVDHLCRLRAQQDETGGFTCFIPLPFLTENSLLKLPPERVGQHVGLDRLRTVA 285

Query: 268 IVRLLFPDI-RITSPTPTMGPELSQFALLGGASNIATVIPDNHPMNIKGVGNPKTGNLKD 326
           + RL+  +I  I +    MG +L+Q AL  GA+++   I +    ++ G    +   +  
Sbjct: 286 VSRLMLDNIAHIKAYWVMMGVKLAQVALHYGANDLDGTIVEEKIGHMAGSDAVQAMTIAQ 345

Query: 327 VICMIKELGLTP 338
           +  MI+  G TP
Sbjct: 346 LEDMIRRSGFTP 357