Pairwise Alignments

Query, 341 a.a., 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB from Methanococcus maripaludis S2

Subject, 322 a.a., radical SAM domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 62.0 bits (149), Expect = 2e-14
 Identities = 65/305 (21%), Positives = 120/305 (39%), Gaps = 14/305 (4%)

Query: 44  ELFSIASEVRDVFKTE-IEITSTVHVTNICSVNPKCKYCGFAAGTSSEGYVKPFRSDDDQ 102
           ELF+ A  VR   K E + +   +  ++ C  +  C+YCG     S+      +R    +
Sbjct: 20  ELFARADAVRRTHKGEHVFVRGLIEFSSHCVRD--CRYCGLRRSNSA---AHRYRLTPRE 74

Query: 103 IKSSSVAIENSGIKRVSCSSGHGY--NGKEVIRALKAVKSASNLEVLVNAGADLTEECIL 160
           +  ++      G   +   SG         +   ++ ++    + V +  G     +  L
Sbjct: 75  VIDAARLAVAGGADTIVLQSGDDLACEASTIAAMIRGIREELGVVVTLGCGERPPRDYAL 134

Query: 161 ELKKYKIDTICCNLETTNKTVFNNVKPGENLEDRINVCKMVKKHGVELSSGLLIGI-GET 219
             ++          ET +  ++  + PG  LE R+   + +   G E+ SG +IGI G+ 
Sbjct: 135 -WREAGASRYLMKHETADAALYARLHPGRTLEQRLEALRTLHGLGYEIGSGFIIGIPGQM 193

Query: 220 YEDRVEHLFFLKELDVEEIPIMGFNPYKETPMETCPKCSAIEQAKTIAIVRLLFPDIRI- 278
            E   + +   +EL VE      F P  +TP+   P+ S     + +A +R+  PD  + 
Sbjct: 194 PEVLADDILLARELGVEMCGAGPFIPQAQTPLGGEPQGSTALALRVLAALRIALPDANLP 253

Query: 279 -TSPTPTMGPELSQFALLGGASNIAT--VIPDNHPMNIKGVGNPKTGNLKDVICMIKELG 335
            T+   T+ P   Q   L   +N+      PD H  + +   N     + +    I+  G
Sbjct: 254 ATTALATLDPIGGQRDGLRAGANVLMPGFTPDTHRAHYRIYDNKHRVGMDEARAAIEAAG 313

Query: 336 LTPKL 340
            T  L
Sbjct: 314 RTHSL 318