Pairwise Alignments

Query, 302 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 303 a.a., DNA-binding protein from Methanococcus maripaludis JJ

 Score =  563 bits (1452), Expect = e-165
 Identities = 285/303 (94%), Positives = 288/303 (95%), Gaps = 1/303 (0%)

Query: 1   MLQKDPCLDDILENSEKLENN-SNKKNIDSIDTIKLSDIIEKMIEINSIVRIEKIFEEKI 59
           MLQKDPCLDDILENSEKLEN   NKKNI  IDTIKLSDIIEKMIEINSIVRIEKIFEEKI
Sbjct: 1   MLQKDPCLDDILENSEKLENTPENKKNIKDIDTIKLSDIIEKMIEINSIVRIEKIFEEKI 60

Query: 60  VSQNPVVNVVVNDGSARGLLSLWSEQISLLNELNEGDAILIENAHAPKKYKDRIHLALSK 119
           VS NPVVNVVVNDG ARGLLSLWSEQI LLN LNEGDAILIENAHAPKKYKDRIHLALSK
Sbjct: 61  VSNNPVVNVVVNDGFARGLLSLWSEQIDLLNGLNEGDAILIENAHAPKKYKDRIHLALSK 120

Query: 120 SGKISKIESDLPTIDELLKKSSAQRNDFSRKSISELKEGIGAELRGLIVAIHSKEPYFPV 179
           SGKISKIESDLP I ELLKKS+AQRNDFSRKSISELKEG+GAELRGLIVAIHSKEPYFPV
Sbjct: 121 SGKISKIESDLPAIGELLKKSNAQRNDFSRKSISELKEGMGAELRGLIVAIHSKEPYFPV 180

Query: 180 CDKCNKKMTLKKGYAVCKCGNKVDEEDENLKWLFLCTCTLDDGSGTIRVTLNNNTNYLDL 239
           CDKCNKKMTLKK YAVCKCGNKVDEED+NLKWLFLCTCTLDDG GTIRVTLNNNTNYLD 
Sbjct: 181 CDKCNKKMTLKKDYAVCKCGNKVDEEDKNLKWLFLCTCTLDDGFGTIRVTLNNNTNYLDF 240

Query: 240 EELKKIIIDDEEILDVLNNKLLGLDILTSGFTIYDEYLKDTAFRCNNWNKIDIMEEFNKK 299
           EELKKIIIDDEEILDVLNNKLLGLDILTSGFTIYDEYLKDTAFRCNNWNKIDIMEEFNK 
Sbjct: 241 EELKKIIIDDEEILDVLNNKLLGLDILTSGFTIYDEYLKDTAFRCNNWNKIDIMEEFNKN 300

Query: 300 LKG 302
           LKG
Sbjct: 301 LKG 303