Pairwise Alignments

Query, 538 a.a., iron ABC transporter permease from Methanococcus maripaludis S2

Subject, 558 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  100 bits (248), Expect = 2e-25
 Identities = 108/476 (22%), Positives = 198/476 (41%), Gaps = 57/476 (11%)

Query: 93  FKFKNFFKIAVFLPIITPGFISSLAYVFLFGRHGAVTYGLLGLE----------PNIYGW 142
           F  +  F+ A+ LP+  P FI    Y  L    G V   L  L           P +   
Sbjct: 84  FPGRRLFEWALLLPLAVPAFILGFTYTELLDYAGPVQATLRALAGWSSPRDYWFPEVRSL 143

Query: 143 KSVVIMQSIDYTTTAFFIISAVLLGISGEFEDAARNLGSNEFQVFKKVTFPLLIPGILSA 202
              +++ S+      + +  A  L  S    + +R LG      F +V  PL  P ++  
Sbjct: 144 GGAILLMSLVLYPYVYLLARAAFLEQSLCTLEVSRTLGCTPLAAFFRVALPLARPSLVVG 203

Query: 203 GLLIFMQSMADFGTPIIVGGNFNTLATASYFEIIGRYNTQMASTLSVILLFPSMALFYLY 262
             L  M+++ D+GT  +   N +TL +  Y   +   N Q A+ ++ +LL   +AL    
Sbjct: 204 VALALMEALNDYGTVKLF--NVHTLTSGLYNVWLIMGNRQGAAQIACVLLTFVVALII-- 259

Query: 263 SKYHKGYELKKSKITKYSLSNIQKVILGIP--------AVFFSIIAYLLFFAVFVASFTK 314
                   L ++K   +      + I G P        A+    +  +L F V  A   +
Sbjct: 260 -----AERLARAKRAYHGAGGRSRPIEGRPLNGLAGGAALIACALPVVLGFGVPAAVLLR 314

Query: 315 SFGHNYALTLDYFYEAISAGQLAIKNTLIYAMSSSILVAFLGVAYS-YIVYRGKFFGRKL 373
           +       TL    EAI    L        +++ S L A + +A   ++ Y G+     L
Sbjct: 315 N-------TLVRLPEAIDGPLLGYARA---SLTLSTLAAAIALALGLFLAYAGRLDPSPL 364

Query: 374 ---MDLVITLPFAIPGTFMGLGYLLAFNNYP----------------LLLTGTSSIIILN 414
              +  +  L +A+PGT + +G L+ F  +                 LLL+G+   ++  
Sbjct: 365 TRWLGRLSGLGYALPGTVLAIGLLVPFGAFDNALDGWMRAHFGLSTGLLLSGSLFALVFA 424

Query: 415 CMVRKLPFSFKTGNSVLSQVEESVEEASLNLGASRLKTFYNVVLPLLKPAIIFSMIYTFI 474
            +VR L  SF    S L++V  S++ A+ +LG    +    V LPL+K +++ + +  F+
Sbjct: 425 YVVRFLALSFGAAESGLARVRPSLDSAARSLGCRPAQVLARVHLPLIKGSLLTAALLVFV 484

Query: 475 ATIKSLGSIIFLMTANTKVLSAMVFESTINRQLGVGACYSMFMVILSIIGILGILR 530
            ++K L + + L   N + L+  VF+   + Q+   A  ++ +V+  +I ++ + R
Sbjct: 485 DSMKELPASLLLRPFNVETLATHVFQFASSEQIERAAPGALAIVVTGLIPVIVLSR 540



 Score = 45.4 bits (106), Expect = 5e-09
 Identities = 31/165 (18%), Positives = 70/165 (42%), Gaps = 23/165 (13%)

Query: 340 NTLIYAMSSSILVAFLGVAYSYIVYRGKFFGRKLMDLVITLPFAIPGTFMGLGY--LLAF 397
           NT +  +   +    +G   +++V   +F GR+L +  + LP A+P   +G  Y  LL +
Sbjct: 56  NTALLLLGVGLGTLVIGTGCAWLVTLYRFPGRRLFEWALLLPLAVPAFILGFTYTELLDY 115

Query: 398 NN-------------------YPLLLTGTSSIIILNCMVRKLPFSFKTGNSVLSQVEESV 438
                                +P + +   +I++++ ++   P+ +    +   +     
Sbjct: 116 AGPVQATLRALAGWSSPRDYWFPEVRSLGGAILLMSLVL--YPYVYLLARAAFLEQSLCT 173

Query: 439 EEASLNLGASRLKTFYNVVLPLLKPAIIFSMIYTFIATIKSLGSI 483
            E S  LG + L  F+ V LPL +P+++  +    +  +   G++
Sbjct: 174 LEVSRTLGCTPLAAFFRVALPLARPSLVVGVALALMEALNDYGTV 218