Pairwise Alignments

Query, 538 a.a., iron ABC transporter permease from Methanococcus maripaludis S2

Subject, 544 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Shewanella sp. ANA-3

 Score =  100 bits (250), Expect = 1e-25
 Identities = 115/550 (20%), Positives = 234/550 (42%), Gaps = 60/550 (10%)

Query: 18  LANVFLLIFIIYPVFTVFLQSFYGSNGFTLDAYSKFISDSYYFGILKNSIVVACFSTIIS 77
           L    +   ++ P+F + LQ+         +A    +  +     + NS+ +  + +I S
Sbjct: 11  LTGYAIAALLVLPLFALILQAAQPD-----EAVFGHLLSTVLPTYISNSLWLILWVSIGS 65

Query: 78  IFLGFLFSIIIFKTDFKFKNFFKIAVFLPIITPGFISSLAYVFLFGRHGAVTYGLLGLEP 137
           + L    + ++ + +F  + + + A+ LP+  P +I +  Y  L    G V   L     
Sbjct: 66  LLLALPCAWLMARCEFVARRYLQWALLLPLAMPAYIVAYVYTDLLDYAGPVQTWL----R 121

Query: 138 NIYGWKS--------------VVIMQSIDYTTTAFFIISAVLLGISGEFEDAARNLGSNE 183
           +++GW S                 + S+      + +     +  S     A+R +G + 
Sbjct: 122 SVFGWSSPQDYFFPDIRTLGGAACVLSLVLFPYIYLLARTAFMEQSLSLAHASRIMGCSP 181

Query: 184 FQVFKKVTFPLLIPGILSAGLLIFMQSMADFGTPIIVGGNFNTLATASYFEIIGRYNTQM 243
           +Q F +++ P+  P +     L+ M++ ADF T         TL TA Y   +G  N   
Sbjct: 182 WQSFWRLSLPMARPALAVGVALVAMETAADFATVNYFA--VPTLTTAVYDTWLGYGNLTA 239

Query: 244 ASTLSVILLFPSMALFYLYSKYHKGYEL--KKSKITK---YSLSNIQKVILGIPAVFFSI 298
           A+ LS I+L    +L  +     +  +L  K+S+I     Y LS +Q ++     +   +
Sbjct: 240 AAKLSAIILLVVFSLIGVERFARRKQQLFQKQSRIQASDLYRLSPLQTLLALGYCITLLL 299

Query: 299 IAYLLFFAVFVASFTKSFGHNYALTLDYFYEAISA--GQLAIKNTLIYAMSSSILVAFLG 356
           +A++L   + +         +YA  +DYF ++      QL++ N+L  A+ +S++   + 
Sbjct: 300 LAFILPSGILL---------SYA--IDYFEQSWDPIFWQLSM-NSLSLALITSLVCCAIA 347

Query: 357 VAYSYIVYRGKFFGRKLMDLVITLPFAIPGTFMGLGYL----------------LAFNNY 400
           +   +I          L   + +  +A+PGT + +G L                L     
Sbjct: 348 LILMFIRRVSPRSSDALPSRLASTGYALPGTVLAIGVLVPLTLLDFAINDVADWLGMTGP 407

Query: 401 PLLLTGTSSIIILNCMVRKLPFSFKTGNSVLSQVEESVEEASLNLGASRLKTFYNVVLPL 460
            LLLTG++  ++    VR +  +  +  +   ++  S++  SL LG S  +    V LPL
Sbjct: 408 GLLLTGSTVALVFAFCVRFVAIAIGSVETSYKRISPSLDMVSLTLGQSPRRLLQRVHLPL 467

Query: 461 LKPAIIFSMIYTFIATIKSLGSIIFLMTANTKVLSAMVFESTINRQLGVGACYSMFMVIL 520
           L   +    +  FI ++K L + + L     + L+  VF+   + +L  GA  ++ +VI+
Sbjct: 468 LTKGLFAGALLVFIESMKELPAALMLRPIGFENLATYVFQFVSDEKLEHGALPAIVIVIV 527

Query: 521 SIIGILGILR 530
            ++ ++ + R
Sbjct: 528 GLVPLIYLNR 537