Pairwise Alignments

Query, 205 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 176 a.a., 4Fe-4S ferredoxin, iron-sulfur binding (NCBI) from Rhodospirillum rubrum S1H

 Score = 56.2 bits (134), Expect = 3e-13
 Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 29/145 (20%)

Query: 89  NRFSV-DPEKCIKCGVCSIFCTI--------------PILKNEIPVLNVPEVTT--ECNN 131
           N+F + DP+KCI C  C + C +                    + V+    VTT  +C++
Sbjct: 2   NKFVIADPKKCIGCRTCEVACVVAHSNGKGGANSMSEESFSPRLRVIKTATVTTPIQCHH 61

Query: 132 C--KLCIQKCPQKAISFEDGKISIN-SKCNLCLKCVEFCPLNALKSPKESLKSK---IIK 185
           C    C+  CP  AI +    + +N ++C  C  CV  CP  A++  K S         +
Sbjct: 62  CDDAPCLNACPNGAIVYSHDSVQVNQARCMGCKNCVMACPFGAMQVVKASAHGNDGDSRR 121

Query: 186 VDLNSCIFCKD------CEEICPVK 204
           V+ + C  C +      C + CP K
Sbjct: 122 VEAHKCDLCIERAAGPACIDACPTK 146



 Score = 38.1 bits (87), Expect = 1e-07
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 16/96 (16%)

Query: 69  IICEHC--GACLNVCPVDAI--EKNRFSVDPEKCIKCGVCSIFC---TIPILKNEIPVLN 121
           I C HC    CLN CP  AI    +   V+  +C+ C  C + C    + ++K      +
Sbjct: 57  IQCHHCDDAPCLNACPNGAIVYSHDSVQVNQARCMGCKNCVMACPFGAMQVVKASAHGND 116

Query: 122 VPEVTTECNNCKLCIQK---------CPQKAISFED 148
                 E + C LCI++         CP K++   D
Sbjct: 117 GDSRRVEAHKCDLCIERAAGPACIDACPTKSLHLVD 152



 Score = 21.6 bits (44), Expect = 0.009
 Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 6/32 (18%)

Query: 36  GETTNPELDDCICC------GLCVDVCPTNAI 61
           G++   E   C  C        C+D CPT ++
Sbjct: 117 GDSRRVEAHKCDLCIERAAGPACIDACPTKSL 148