Pairwise Alignments

Query, 205 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 295 a.a., NADH:quinone oxidoreductase subunit RnfB (Shelley Haveman) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 63.5 bits (153), Expect = 4e-15
 Identities = 47/140 (33%), Positives = 65/140 (46%), Gaps = 27/140 (19%)

Query: 46  CICCGLCVDVCPTNAISVFKFRDII----CEHCGACLNVCPVDAIEKNRFSVDPEKCIKC 101
           C+  G CV+VCP +A+ +      +    C  CG C+N CP     +N   + P +    
Sbjct: 140 CLGLGDCVEVCPFDALHIENGLTHVDLAKCTGCGVCINACP-----RNTLELIPVRARVA 194

Query: 102 GVCSIFCTIPILKNEIPVLNVPEVTTECNNCKLCIQKCPQKAISFEDGKISINSK----- 156
            +CS   T   LK    V+ V EV   C NC  C++ CP  AIS E G+I I+ K     
Sbjct: 195 VMCS---TKEKLK---AVMEVCEV--GCINCGKCVKACPAHAISQETGRIEIDQKKCLSY 246

Query: 157 ---CNLCLKCVEFCPLNALK 173
              CN    CV  CP N ++
Sbjct: 247 GPDCNEA--CVTACPRNIMR 264



 Score = 52.8 bits (125), Expect = 6e-12
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 27/108 (25%)

Query: 39  TNPELDDCICCGLCVDVCPTNAISVFKFR--------------------DIICEHCGACL 78
           T+ +L  C  CG+C++ CP N + +   R                    ++ C +CG C+
Sbjct: 162 THVDLAKCTGCGVCINACPRNTLELIPVRARVAVMCSTKEKLKAVMEVCEVGCINCGKCV 221

Query: 79  NVCPVDAI--EKNRFSVDPEKCIKCG-----VCSIFCTIPILKNEIPV 119
             CP  AI  E  R  +D +KC+  G      C   C   I+++  PV
Sbjct: 222 KACPAHAISQETGRIEIDQKKCLSYGPDCNEACVTACPRNIMRHMCPV 269



 Score = 36.2 bits (82), Expect = 6e-07
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 136 IQKCPQKAISFEDGKISINSKCNLCLKCVEFCPLNALKSPKESLKSKIIKVDLNSCIFCK 195
           +  C   A+ F DG  S +  C     CVE CP +AL      +++ +  VDL  C  C 
Sbjct: 120 VPSCAAAALLF-DGSDSCSYSCLGLGDCVEVCPFDAL-----HIENGLTHVDLAKCTGCG 173

Query: 196 DCEEICP 202
            C   CP
Sbjct: 174 VCINACP 180