Pairwise Alignments

Query, 205 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 293 a.a., Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfB (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 63.5 bits (153), Expect = 4e-15
 Identities = 40/124 (32%), Positives = 54/124 (43%), Gaps = 22/124 (17%)

Query: 71  CEHCGACLNVCPVDAIEKNRFS----VDPEKCIKCGVCSIFCTIPILKNE---------- 116
           C  CG C+  C  DAI  N  +    VD  KC  CG C   C   I++            
Sbjct: 142 CLGCGDCVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAIIEIRPQGKKSRRVY 201

Query: 117 IPVLNVPE-------VTTECNNCKLCIQKCPQKAISFEDGKISIN-SKCNLCLKCVEFCP 168
           I  +N  +        T  C  C  C++ CP +AI+ E+    I+ +KC  C KCVE CP
Sbjct: 202 ISCVNKDKGAVARKACTVSCIGCGKCVKTCPFEAITLENNLAYIDPNKCKSCRKCVEVCP 261

Query: 169 LNAL 172
            N +
Sbjct: 262 QNTI 265



 Score = 52.0 bits (123), Expect = 1e-11
 Identities = 36/114 (31%), Positives = 44/114 (38%), Gaps = 31/114 (27%)

Query: 37  ETTNPELDD--CICCGLCVDVCPTNAISVF-----------------------KFRDIIC 71
           ET  PE+D+  C  CG CV  CP   I +                        K   + C
Sbjct: 162 ETGLPEVDEAKCTACGACVKACPKAIIEIRPQGKKSRRVYISCVNKDKGAVARKACTVSC 221

Query: 72  EHCGACLNVCPVDAI--EKNRFSVDPEKCIKCGVCSIFCTIPILKNEIPVLNVP 123
             CG C+  CP +AI  E N   +DP KC  C  C   C     +N I  LN P
Sbjct: 222 IGCGKCVKTCPFEAITLENNLAYIDPNKCKSCRKCVEVCP----QNTIIELNFP 271