Pairwise Alignments

Query, 65 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 54.3 bits (129), Expect = 8e-13
 Identities = 23/49 (46%), Positives = 29/49 (59%)

Query: 5   VNEDECIACGACVPVCPVQAISENADGKAVIDCAKCNDCGDCSDVCPVE 53
           ++E+ C++CG C   CPV AIS N  G   ID   C  C +C  VCPVE
Sbjct: 123 IDEEICVSCGTCENACPVDAISHNNTGLYEIDVNICVSCKNCLKVCPVE 171



 Score = 42.4 bits (98), Expect = 3e-09
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 8   DECIACGACVPVCPVQAIS-----ENADGKAVIDCAKCNDCGDCSDVCPVECIK 56
           ++CI+C AC   CP  AIS     E      V D   C +CG+C + CP   ++
Sbjct: 47  EKCISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVESCPTNVLE 100



 Score = 39.3 bits (90), Expect = 3e-08
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 3   YKVNEDECIACGACVPVC--PVQAISENADGKAVIDCAKCNDCGDCSDVCPVECIKQEKT 60
           Y V+E++CI C  C   C  P   +         I+   C  CG C + CPV+ I   KT
Sbjct: 276 YIVDEEKCIGCRICYRACNVPEAILISKETNLPYINPEYCVRCGLCQNACPVDAIDYLKT 335



 Score = 38.1 bits (87), Expect = 6e-08
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 14/65 (21%)

Query: 10  CIACGACVPVCPVQAISENADGKA--------------VIDCAKCNDCGDCSDVCPVECI 55
           CI CG CV  CP   +      K               +ID   C  CG C + CPV+ I
Sbjct: 84  CINCGNCVESCPTNVLEMGTLRKEAKELLWNVPKIINLLIDEEICVSCGTCENACPVDAI 143

Query: 56  KQEKT 60
               T
Sbjct: 144 SHNNT 148



 Score = 35.4 bits (80), Expect = 4e-07
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 6/47 (12%)

Query: 10  CIACGACVPVCPVQAISENADGKAVIDCAKCNDCGDCSDVCPVECIK 56
           CI CG CV VCP     E       +    C   G C +VCP   I+
Sbjct: 221 CIGCGNCVDVCPGSIDLER------LKVTSCIKSGKCLEVCPTTAIR 261



 Score = 33.1 bits (74), Expect = 2e-06
 Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 43/106 (40%)

Query: 2   VYKVNEDECIACGACVPVCPVQ---------------AISEN---------ADGKAVIDC 37
           +Y+++ + C++C  C+ VCPV+                I++N         +D K   D 
Sbjct: 150 LYEIDVNICVSCKNCLKVCPVENAIVTYDEPGLSEKIEIAQNTKFDRERLGSDFKEESDV 209

Query: 38  ---------AKCNDCGDCSDVCP----------VECIKQEKTCGCC 64
                    + C  CG+C DVCP            CIK  K    C
Sbjct: 210 IAEIPRIVPSLCIGCGNCVDVCPGSIDLERLKVTSCIKSGKCLEVC 255



 Score = 30.4 bits (67), Expect = 1e-05
 Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 8/51 (15%)

Query: 10  CIACGACVPVCPVQAISENADGKA--------VIDCAKCNDCGDCSDVCPV 52
           CI  G C+ VCP  AI      K         ++D  KC  C  C   C V
Sbjct: 245 CIKSGKCLEVCPTTAIRIGVPEKITKRTAECYIVDEEKCIGCRICYRACNV 295



 Score = 24.6 bits (52), Expect = 7e-04
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 39 KCNDCGDCSDVCPVECIKQE 58
          KC  C  C + CP + I  E
Sbjct: 48 KCISCSACKESCPSDAISME 67