Pairwise Alignments

Query, 394 a.a., TIGR00375 family protein from Methanococcus maripaludis S2

Subject, 1244 a.a., UvrD/REP helicase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  155 bits (392), Expect = 6e-42
 Identities = 118/416 (28%), Positives = 189/416 (45%), Gaps = 59/416 (14%)

Query: 5   ADLHIHSKYSMGTSKYMDIEHILKYGPVKGLDLIATGDCLHAKWL--------------- 49
           ADLHIHS++S  TS  ++  H+  +  VKGLD++ TGD  H +W                
Sbjct: 6   ADLHIHSRFSRATSGRLNARHLAAWARVKGLDVLGTGDFTHPRWRAELAEQLVPDEASGL 65

Query: 50  ----------EEIEKYADKPL------LLSTEVED-------RNRVHHLIYLPHTSQAHD 86
                      E+ +YA KPL      +L  E+           +VH+L+Y+P    A  
Sbjct: 66  YRLRDPRGLDAELPEYAGKPLAGRTLFMLQAEISSIYKRGGKVRKVHNLVYVPDMDAADR 125

Query: 87  LRDKFSKYSKNIDADGRPRVSLNGMEIIDAVRDI--GGLIGPAHAFTPWTSIYKS---FT 141
           L  + ++   NI++DGRP + L+   +++ V +      + PAH +TPW +++ S   F 
Sbjct: 126 LSRRLAEVG-NIESDGRPILGLDSRNLLEMVLETHPQAFLVPAHIWTPWFALFGSKSGFD 184

Query: 142 SIYNCYARKPDFI---ELGLSADTDMADMVKELRDLPFLSNSDAHSFYSHRLGREFNQMD 198
           S+  C+      I   E GLS+D +M  +  EL     +SNSDAHS     LGRE N   
Sbjct: 185 SVAECFGDLSSEIFAMETGLSSDPEMNWLWSELDRFALISNSDAHS--GENLGREAN--- 239

Query: 199 VDELGGLETNFEEVKKVLKHNKITANY----GLDPNLGKYHLTACTRCYTRFTLEDATEN 254
              L   E  +E + + LK   I   +       P  GKYHL    +C       +    
Sbjct: 240 ---LFSGEIGYESILRSLKGQGIGGRFLGTLEFFPEEGKYHLDGHRKCGVVMEPRETRAR 296

Query: 255 NFKCPECKGTIKRGVHDKTLELSKDKKVIHPDFRPKYHKIIPLAEIISLAIGKNIGTKSV 314
              CP C   +  GV  + +EL+  +  I    +  Y  +IPL EI+   +G    ++ V
Sbjct: 297 GGLCPVCGKPVTVGVLHRVVELADRETPIQSPGQQGYLSLIPLPEILGELLGVGAKSRKV 356

Query: 315 DTIWEQYIEKYGNEIDVLINEDISELKKINEHVGKIIELFRTDKIYIYPGGGGEYG 370
                + + ++G+E+++L +   +EL +  E +G+ I   R  ++    G  GEYG
Sbjct: 357 AEQHARCVARFGSELNILQDVPEAELSRFWEPLGEGIARMRRREVLRQSGYDGEYG 412