Pairwise Alignments

Query, 394 a.a., TIGR00375 family protein from Methanococcus maripaludis S2

Subject, 1127 a.a., ATP-dependent DNA helicase, UvrD/REP family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  144 bits (362), Expect = 2e-38
 Identities = 110/416 (26%), Positives = 188/416 (45%), Gaps = 59/416 (14%)

Query: 5   ADLHIHSKYSMGTSKYMDIEHILKYGPVKGLDLIATGDCLHAKWLEEIEKYADK------ 58
           ADLHIHS++S  TS  ++  H+  +  VKG+D++ TGD  H +WL E+ +   +      
Sbjct: 6   ADLHIHSRFSRATSSRLNARHLAAWAAVKGIDVLGTGDFTHPQWLAELREQLVRDDASGL 65

Query: 59  -----PLLLSTEV---EDR------------------------NRVHHLIYLPHTSQAHD 86
                P  LS E+    DR                         +VH+++Y+P       
Sbjct: 66  YRLRDPRGLSDELPAFADRVKQSRCLFVPQAEISSIYKRGGKVRKVHNIVYMPDFDAVDR 125

Query: 87  LRDKFSKYSKNIDADGRPRVSLNGMEIIDAVRDIG--GLIGPAHAFTPWTSIYKS---FT 141
           L  K ++   N+ +DGRP + L+  +++  V D    G++ PAH +TPW +++ S   F 
Sbjct: 126 LNRKLAEVG-NLVSDGRPILGLDARDLLGMVLDADPRGVLVPAHIWTPWFAVFGSKSGFD 184

Query: 142 SIYNCYARKPDFI---ELGLSADTDMADMVKELRDLPFLSNSDAHSFYSHRLGREFNQMD 198
           ++ +C+      I   E GLS+D +M  +   L     +SNSDAHS     LGRE N  +
Sbjct: 185 TLDDCFGDLTGEIFALETGLSSDPEMNWLWSHLDRFALISNSDAHS--GDNLGREANLFE 242

Query: 199 VDELGGLETNFEEVKKVLKHNKITANY----GLDPNLGKYHLTACTRCYTRFTLEDATEN 254
                  E +++ + + L+ + +   +       P  GKYHL     C   +   +    
Sbjct: 243 G------EMSYDGIFRSLRGDAVDCRFLGTLEFFPEEGKYHLDGHRACNVVYEPRETVAR 296

Query: 255 NFKCPECKGTIKRGVHDKTLELSKDKKVIHPDFRPKYHKIIPLAEIISLAIGKNIGTKSV 314
              CP C   +  GV  + LEL+          R  +  +IPL EI+   +G    ++ V
Sbjct: 297 GGLCPVCGKPLTVGVLHRVLELADRDTPEQVAGRQGFRSLIPLPEILGEILGVGAKSRKV 356

Query: 315 DTIWEQYIEKYGNEIDVLINEDISELKKINEHVGKIIELFRTDKIYIYPGGGGEYG 370
                + ++++G E+ +L +  +  L++  E +G+ I   R  ++    G  GEYG
Sbjct: 357 ADWTGRLVQRFGPELAILQDVSLDALRRYWEPLGEGIARMRRGEVLRQGGYDGEYG 412