Pairwise Alignments

Query, 348 a.a., mRNA surveillance protein pelota from Methanococcus maripaludis S2

Subject, 348 a.a., mRNA surveillance protein pelota from Methanococcus maripaludis JJ

 Score =  677 bits (1746), Expect = 0.0
 Identities = 345/348 (99%), Positives = 347/348 (99%)

Query: 1   MKIIQEIPERNIIKLIPENLDDLWHLSHIIQPYNAIYAVTERRTEDKGDKLRADRGTKRR 60
           MKIIQEIPE+NIIKLIPENLDDLWHLSHIIQPYNAIYAVTERRTEDKGDKLRADRGTKRR
Sbjct: 1   MKIIQEIPEKNIIKLIPENLDDLWHLSHIIQPYNAIYAVTERRTEDKGDKLRADRGTKRR 60

Query: 61  VFLGIKAEKINFHEDFNRLRVSGKIIHAPDDIPIGSYHTIDIEPFLQVSVQKNWKKWDIE 120
           VFLGIKAEKINFHEDFNRLRVSGKIIHAPDDIPIGSYHTIDIEP LQVSVQKNWKKWDIE
Sbjct: 61  VFLGIKAEKINFHEDFNRLRVSGKIIHAPDDIPIGSYHTIDIEPLLQVSVQKNWKKWDIE 120

Query: 121 RLKEAEDSSKKPKVVVVIMDDSEADIFLVREFGIKELASIKSGVSKKLDYKQNEQAKFSY 180
           RLKEAEDSSKKPKVVVVIMDDSEADIFLVREFGIKELASIKSGVSKKLDYKQNEQAKFSY
Sbjct: 121 RLKEAEDSSKKPKVVVVIMDDSEADIFLVREFGIKELASIKSGVSKKLDYKQNEQAKFSY 180

Query: 181 YSDIINSISEFEGKILFAGPGFGRNNIQNYISEKYKSLAPNVVVESANHTGKSGLSEILK 240
           YSDIINSISEFEGKILFAGPGFG+NNIQNYISEKYKSLAPNVVVESANHTGKSGLSEILK
Sbjct: 181 YSDIINSISEFEGKILFAGPGFGKNNIQNYISEKYKSLAPNVVVESANHTGKSGLSEILK 240

Query: 241 SGIIDKIYGEARISKETQVVEKLLEEISKKGLAAYGIESVNNAMNFSAIDTLLLTDEYLR 300
           SGIIDKIYGEARISKETQVVEKLLEEISKKGLAAYGIESVNNAMNFSAIDTLLLTDEYLR
Sbjct: 241 SGIIDKIYGEARISKETQVVEKLLEEISKKGLAAYGIESVNNAMNFSAIDTLLLTDEYLR 300

Query: 301 RNRRSVENLMNSVENINGNIIIVSTEHDAGKQLKALGGISALLRFPIE 348
           RNRRSVENLMNSVENINGNIIIVSTEHDAGKQLKALGGISALLRFPIE
Sbjct: 301 RNRRSVENLMNSVENINGNIIIVSTEHDAGKQLKALGGISALLRFPIE 348