Pairwise Alignments

Query, 359 a.a., Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain from Methanococcus maripaludis S2

Subject, 375 a.a., Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain from Methanococcus maripaludis JJ

 Score = 83.2 bits (204), Expect = 1e-20
 Identities = 71/240 (29%), Positives = 120/240 (50%), Gaps = 16/240 (6%)

Query: 104 YKAKSTLET--KNIQSGGVVTAILANAFDEDLIDGAIVMMEDKWTMDPKSYLATSKEDVL 161
           Y  +ST E   K+ + GG VTA      D+ L+DG + + + +   D   YL    ++++
Sbjct: 4   YLVQSTDEDILKHAECGGAVTAFFKYLLDKKLVDGVLALKKGEDVYDGLPYLVNDSKELV 63

Query: 162 KTAGSRYNWNVPILEVLKEAVMVKKLNKIAVVGTPCVINAVYQMMATNNDLVEPFKKAIR 221
           +T GS +    P +     +  +K +N +AV   PC   A+ ++   +        K   
Sbjct: 64  ETCGSLH--CAPTMFGNMISKHLKDMN-LAVSVKPCDAMAIVELEKRHQ-----IDKDKL 115

Query: 222 LKISLFCFETFDYDKMLKKLKEV--EVNPWDIKKMEIDKGKLIVSTIHGNVFNFKIDEMD 279
             I L C  T    +  KK+ E+  +V+P D+ K EIDKGK I+    G+  + KIDE++
Sbjct: 116 YTIGLNCGGTVP-PQTAKKMIELFYDVDPEDVIKEEIDKGKFIIELKDGSEKSVKIDELE 174

Query: 280 E--YVRK-GCKVCRDFTGISSDISVGNVGTPEGYSTVLVRNKWGKGFFDRAVINGYVSVE 336
           E  Y R+  C+ C      +SD++ GN GT +G++ V V ++ G+     A   GY++V+
Sbjct: 175 EEGYGRRTNCQRCELKVPRNSDLACGNWGTEKGWTFVEVGSEKGEELLKNAQKEGYINVK 234



 Score = 28.5 bits (62), Expect = 3e-04
 Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 20/82 (24%)

Query: 10  EVWDK--ETCSGCGACVSVCPTENIYFKQQSPVQFDCDECACIIVPTENGESPISA---- 63
           E WD+    C  C  C  VCP   I F         C ECA      + G  P       
Sbjct: 271 EKWDEYWSRCIKCYGCRDVCP---ICF---------CKECALGEDYLDKGTIPPDPIMFQ 318

Query: 64  --EFCKVTLYDVNCGACYNACP 83
                 ++   +NCG C + CP
Sbjct: 319 GIRLSHMSFSCINCGQCEDVCP 340



 Score = 26.2 bits (56), Expect = 0.001
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 4/30 (13%)

Query: 16  TCSGCGACVSVCPTE----NIYFKQQSPVQ 41
           +C  CG C  VCP E     IY + Q  ++
Sbjct: 328 SCINCGQCEDVCPVEIPLAKIYHRAQLKIR 357