Pairwise Alignments

Query, 411 a.a., ammonium transporter from Methanococcus maripaludis S2

Subject, 408 a.a., ammonium transporter (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  200 bits (508), Expect = 7e-56
 Identities = 138/400 (34%), Positives = 208/400 (52%), Gaps = 25/400 (6%)

Query: 25  DVMFLIFTGAFIFIMHLGFAMLEGGQVREKNVNNAMMKNMGDWIIGCISWLLVGSVIART 84
           D  + + +GA +  M  GFAMLE G VR KN    + KN+  + I C+ +LLVG  I   
Sbjct: 11  DTFYFLISGALVMWMAAGFAMLEAGLVRSKNTTEILTKNVVLYAIACVMYLLVGYNIMYV 70

Query: 85  LNPADFFI-WWGKIASATPFLTNNGLELANWFLGLVFAATAATIVAGGIAERIKFKSYIL 143
            N    ++  +G +  +     N+ LE +++F  +VF ATA +IV+G +AER+K  ++++
Sbjct: 71  DNAEGGWLPSFGTLIGSQAADANHALE-SDFFFQVVFVATAMSIVSGAVAERMKLWAFLV 129

Query: 144 ISIVITALLYPFFSYLGPWGAGVIP---FHDYAGSLMVHGVGGFLALGLIAAIGPRFGRF 200
            S+V+T ++YP   Y   WG G I    F D+AGS +VH  G   A+  +  +G R G++
Sbjct: 130 FSVVMTGIIYPVEGY-WTWGKGFIASLGFVDFAGSGIVHMTGAAAAIAGVLLLGARKGKY 188

Query: 201 -VNKKAITIPGHNIPMSILGAYILAFGWYGFNVGSSLALSDISGL-----VCATTTLAMA 254
             N +   IPG N+PM+ LG +IL  GW+GFN GS L +SD +       V   T  A A
Sbjct: 189 GPNGQVNPIPGSNLPMATLGMFILWMGWFGFNGGSQLMVSDAANASAVAKVFVNTNTAAA 248

Query: 255 GGGLGG-----CLFSKNDVLYTANGLLAGTVAICAGTDIVSPLGALIIGFIAGSQVPLIF 309
            G +        ++ K D+    NG+LAG VAI A     S L A +IG +AG  V    
Sbjct: 249 LGAISALIVCKMIWGKADLTMILNGILAGLVAITADPLSPSLLMAGVIGLVAGGLVVFSI 308

Query: 310 KIVEKMGLDDVCGVIPVHATSGALGAILAGIFGMTAFGGVGGVSLTEQIIATLICAVYGT 369
             ++++ +DD  G I VH  +G LG +   +    A       ++T Q+    I   +  
Sbjct: 309 VGLDRIKIDDPVGAISVHGVAGFLGLMCVPLSNANA-------TITAQLTGAAIIFAWVF 361

Query: 370 GAGFILGKLVGAVTGGLRVKESEEKAGLDISIHKLPAYPK 409
            A F +   V  +T G+RV E EE  G+D S   + AYP+
Sbjct: 362 SASFAVW-FVLKMTMGIRVSEEEEYNGMDASDCGIDAYPE 400