Pairwise Alignments

Query, 408 a.a., ammonium transporter from Methanococcus maripaludis S2

Subject, 485 a.a., ammonium transporter (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  245 bits (625), Expect = 2e-69
 Identities = 164/434 (37%), Positives = 234/434 (53%), Gaps = 39/434 (8%)

Query: 2   ATADLFADPTNIVTGLSTLATSGDVMFLVLMGVLVFSMQLGFALLEGGQVRKKNVNNVMM 61
           ATA     P  I      LA   + ++++L  +LVF MQ GFAL+E G  R KN  N++M
Sbjct: 60  ATASAETTPDTI----GELALGLNTVWMLLAAMLVFFMQPGFALVEAGFTRVKNTANILM 115

Query: 62  KNMADWLIGAVSWLFIGGVLSVSLVPADFFSWWGQIFTTNFANNGIDLANWF-FGLVFAA 120
           KN  D++ G++ + FIG  L   +  A         F  +F ++ +    +  F  VF A
Sbjct: 116 KNFVDFMFGSLLYWFIGFGL---MFGAGGLIGMPHFFDLSFLDSDLPREGFLVFQTVFCA 172

Query: 121 TAATIVSGGVAERIKFKSYLLMSIIITAILYPLFVYLGPWGSGMI--------------- 165
           TAATIVSG +AER KF  YL+ +I I+ ++YP+  +   WG G +               
Sbjct: 173 TAATIVSGAMAERTKFSMYLVYTIFISVLIYPISGH-WTWGGGWLMNGEEGSFMMNLFGT 231

Query: 166 PFNDYAGSFVVHGLGGFLALGAIAALGPRIGKF-VNKKAISIPGHNIPMSVFGAFVLAIG 224
            F+D+AGS +VH +GG++AL   A LGPRIGK+  + K+ +IPGHN+ ++  G F+L  G
Sbjct: 232 TFHDFAGSTIVHSVGGWIALVGAAILGPRIGKYGKDGKSRAIPGHNLTVAALGVFILWFG 291

Query: 225 WYGFNVGSSFAV---ADISGL--VCATTTLAMAGGGIGALLAS-----KDDVLFTANGIV 274
           W+GFN GS  A    AD   +  V  TT LA   GG  AL  S     K  +  T NG++
Sbjct: 292 WFGFNPGSQLAASTEADAMAISHVFLTTNLAACAGGFFALAMSWMKYGKPSLSLTLNGVL 351

Query: 275 AGLVAICSGTDVVSPIGALIIGLVAGIQVPIVYKIVEK-MGLDDVCGVIPVHGTAGILGG 333
           AGLV I +G D V+P GA++IG + G+ +      ++K + +DD  G   VHG  G LG 
Sbjct: 352 AGLVGITAGCDAVAPSGAVLIGAICGVVMIFAVDFIDKVLKIDDPVGASSVHGVCGFLGT 411

Query: 334 ILTGVFGMA--ALGGAGGVSLVNQLIAAGLTVVYGTGLGFGLGKLVGGFTGGLRVTEEEE 391
           +LTG+F  +     G G   L  QL  A +  V+  G+GF + K++     GLRV    E
Sbjct: 412 VLTGLFSTSEGLFYGHGAGFLGAQLFGAVVVGVWAAGMGFIIFKVLDKI-HGLRVPARVE 470

Query: 392 KMGLDLAEHKLPAY 405
           + GLD+ EH   AY
Sbjct: 471 EEGLDIYEHGESAY 484