Pairwise Alignments

Query, 448 a.a., RNase J family beta-CASP ribonuclease from Methanococcus maripaludis S2

Subject, 609 a.a., hypothetical protein from Synechococcus elongatus PCC 7942

 Score =  195 bits (496), Expect = 3e-54
 Identities = 134/445 (30%), Positives = 224/445 (50%), Gaps = 29/445 (6%)

Query: 2   QLEVVAIGGYEEVGRNMTAVNIDGEIIIFDMGVRLDRIMIHEDTDISKMHSLNLIEMGVI 61
           +L ++ +GG  E+G+N     +  EI++ D G+          TD   MH +N+    V+
Sbjct: 22  RLRIIPLGGLHEIGKNTCIYEVGDEILLVDAGLAFP-------TD--GMHGVNV----VL 68

Query: 62  PDDTVMKNIEGEVKAIVLTHGHLDHIGAITKLAHRYNAPIIGTPYTLELVKREILSEKKF 121
           PD T ++  +  +KA+V+THGH DHIG I     + + PII  P     +    L E   
Sbjct: 69  PDMTYLRENQHRIKAMVVTHGHEDHIGGIPFHLRQLDIPIIYGPRLAMALLAGKLEEAGV 128

Query: 122 DVRNPLITLENGNKLDLTANITLEFVKITHSIPDAAMAVLHTPYGAVVYGNDFKFDNFPV 181
             R  + T++    + +  N  +EF++ THSI D+    + TP G V++  DFKFD+ PV
Sbjct: 129 VGRANVKTVQPREVVRIGQNFLVEFIRNTHSIADSFTLAIRTPLGVVIHTGDFKFDHTPV 188

Query: 182 VGEKPDYKALKRIGKQGVIAMVSESTRVDFEGKTASEGVAANLLKNDLLGTDNEDNAVVV 241
            GE  D + L   G+QGV+ +VS+ST  +  G T SE    ++  N           ++V
Sbjct: 189 DGETFDIQRLADYGEQGVLCLVSDSTNAELPGFTPSE---RSVFPNLDRAFSQAQGRLIV 245

Query: 242 TTFSSHIARIKSITDIASKMGRIPVLVGRSMSKYCGIAQDIGLVKFPKETKICWDPSSID 301
           TTF+S + R+  I ++A K GR   ++GRSM      A+++G +        C D   + 
Sbjct: 246 TTFASSVHRVNMILELAKKHGRKVTVLGRSMLNVIAHARNLGYIH-------CSD--DLF 296

Query: 302 KTFHQIMKDGKENYLMVVTGHQGEEGAVLSRMATNKTP-FRFEKYDQVVFSADVIPNPMN 360
               ++      + L++ TG QGE  A L+R+A  + P  +  + D V+FSA+ IP    
Sbjct: 297 LPLKELRDHPDRDVLILTTGSQGEPLAALTRIARQEHPQVKIRQGDTVIFSANPIPGNTI 356

Query: 361 AAQRYLLEARLNLAGVRLFKGA--HVSGHAAKEDHRDILRWLQPEHLIPAHGDFNLTSAY 418
           +    + +  +  A V   KGA  HVSGH  +ED + ++   +P+  +P HG+  +   +
Sbjct: 357 SVVNTIDQLMMQGAHVVYGKGAGIHVSGHGCQEDQKLMIALTKPKFFVPVHGEHRMLVQH 416

Query: 419 AKLAEEEGFRLGEDVHLLRNGQSLK 443
            K A+  G    E + ++ NG +++
Sbjct: 417 CKTAQSMGVP-PEHMIVIDNGDTVE 440