Pairwise Alignments

Query, 448 a.a., RNase J family beta-CASP ribonuclease from Methanococcus maripaludis S2

Subject, 555 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  176 bits (445), Expect = 2e-48
 Identities = 117/392 (29%), Positives = 206/392 (52%), Gaps = 31/392 (7%)

Query: 60  VIPDDTVMKNIEGEVKAIVLTHGHLDHIGAITKLAHRYNAPIIGTPYTLELVKREILSEK 119
           V+PD   +      +KAI++TH H DH GA+  L    N P+  +P+T  +++ +   EK
Sbjct: 55  VLPDIAFLAEQRRNLKAIIITHAHEDHYGALNDLWPGLNVPVYASPFTAGMLEAKRAFEK 114

Query: 120 KFDVRNPLITLENGNKLDLTANITLEFVKITHSIPDAAMAVLHTPYGAVVYGNDFKFDNF 179
                 P+   + G+++++    ++E V + HSIP+    V+ T  G VV+  D+K D  
Sbjct: 115 SRS-EIPITIFKQGDRINV-GPFSVEAVGVNHSIPEPMALVIRTQLGTVVHTGDWKIDLE 172

Query: 180 PVVGEKPDYKALKRIGKQGVIAMVSESTRVDFEGKTASEGVAANLLKNDLLGTDNEDNAV 239
           P +G   D    ++IG++GV+A+V +ST    EG + SE   +  L   +    + +  V
Sbjct: 173 PSLGPLTDESRFRQIGEEGVLALVCDSTNALREGVSPSERQVSESLAKIIA---DAEGRV 229

Query: 240 VVTTFSSHIARIKSITDIASKMGRIPVLVGRSMSKYCGIAQDIGLVKFPKETKICWDPSS 299
            +TTFSS++ RI+S+ + A   GR  +L+G SM +   +A+D+GL++  K       P  
Sbjct: 230 GITTFSSNVGRIRSVAEAAEAAGREVLLLGSSMKRVVDVARDVGLMEGVK-------PFL 282

Query: 300 IDKTFHQIMKDGKENYLMVVTGHQGEEGAVLSRMATNK-TPFRFEKYDQVVFSADVIP-- 356
            +  F  I +D     ++++TG QGE  A L+++A ++     F   D +VFS+  IP  
Sbjct: 283 AEDEFGYIPRD---KVVVILTGSQGEPRAALAKIARDEMRNVAFSAGDTIVFSSRTIPGN 339

Query: 357 -NPMNAAQRYLLEARLNLAGVRLFKGA----HVSGHAAKEDHRDILRWLQPEHLIPAHGD 411
              +N  +  L+E      G+ +   +    HVSGH  + + + + +W++P+ L+P HG+
Sbjct: 340 EKAINDIKNGLIE-----QGIHIITDSEALVHVSGHPRRTELQQMYQWVKPQILVPVHGE 394

Query: 412 FNLTSAYAKLAEEEGFRLGEDVHLLRNGQSLK 443
               +A+A+L  + G      V  LRNG+ L+
Sbjct: 395 AAHLTAHAELGLQSGI---PSVPRLRNGEMLR 423