Pairwise Alignments

Query, 355 a.a., type 2 isopentenyl-diphosphate Delta-isomerase from Methanococcus maripaludis S2

Subject, 346 a.a., isopentenyl-diphosphate delta-isomerase, type 2 from Pseudomonas stutzeri RCH2

 Score =  218 bits (554), Expect = 2e-61
 Identities = 131/346 (37%), Positives = 199/346 (57%), Gaps = 8/346 (2%)

Query: 1   VNNNSIEYRKLEHL-IVCDHCDVEYKKGTLLEDVELIHSGISNCDLDDIDTSIEIFGKKL 59
           ++  S+  RK +HL IV D        GT        H  +    LD ID    +FG+ L
Sbjct: 1   MSKQSLVSRKNDHLDIVLDPARAAGATGTGFGAFRFEHCALPELHLDQIDLKGALFGRSL 60

Query: 60  NAPLIVAAITGGHPKAKEVNKNIAIAVEELNLGMGVGSQRAAISKSYLEDTYSVVRDHTS 119
            APL+++++TGG  ++  +N ++A A + L + M VGSQR A+  +  +     +R    
Sbjct: 61  RAPLLISSMTGGAARSAAINAHLAEAAQHLGIAMAVGSQRVALETAGDQGLTGQLRQLAP 120

Query: 120 S-LIIGNLGAVNFVEDSWDEEIISKSVEMIDADAMAIHFNPLQEAIQPEGDVNFKGLNIL 178
             L++ N GA   V     +E   ++VEMID DA+ +H NPLQEA+QP GD +++G  +L
Sbjct: 121 DILLLANFGAAQLVRGYGVDEA-RRAVEMIDGDALIVHLNPLQEAVQPGGDRDWRG--VL 177

Query: 179 KEIISNYNKIHGKIPFIAKQVGEGFSKKDAIFLKEIGFDAIDVGGSGGTSWAAVELYRIK 238
           + I +   ++   +P + K+VG G S   A  L + G  AIDV GSGGTSWAAVE  R  
Sbjct: 178 QAIEALARRL--AVPVVIKEVGAGISATVARQLVDAGVAAIDVAGSGGTSWAAVEAERAT 235

Query: 239 DEEQKNFSNQYFNWGIPTAASILEVNSAFSG-PIIATGGIRTGIDIAKSISIGANCCGTA 297
           D  Q+  +  + +WGIPTA ++  V  A  G P+IA+GGIR G++ AK+I +GA+  G A
Sbjct: 236 DVSQRAIAQAFADWGIPTAQALQAVREACPGTPLIASGGIRDGVEAAKAICLGADLVGQA 295

Query: 298 LPILKAALKSSEAVTTVLERMIKELKTTMFLTGCNNINELKSARYI 343
             +L+AA+ SS+AV    E +I++L+   F TG  ++ EL+ AR +
Sbjct: 296 AGVLQAAMLSSDAVVQHFEVLIEQLRIACFCTGSASLAELRQARLL 341