Pairwise Alignments

Query, 355 a.a., type 2 isopentenyl-diphosphate Delta-isomerase from Methanococcus maripaludis S2

Subject, 348 a.a., isopentenyl pyrophosphate isomerase from Synechococcus elongatus PCC 7942

 Score =  201 bits (510), Expect = 3e-56
 Identities = 122/329 (37%), Positives = 183/329 (55%), Gaps = 9/329 (2%)

Query: 4   NSIEYRKLEHLIVCDHCDVEYKKGTL-LEDVELIHSGISNCDLDDIDTSIEIFGKKLNAP 62
           +S+  RK EHL +C    VE  + T  LE     H  + N  L  +D   +  G+ L AP
Sbjct: 9   SSLPQRKAEHLQLCLEAGVESPEVTTGLERYRFQHCALPNLSLQALDLGTQFLGRSLGAP 68

Query: 63  LIVAAITGGHPKAKEVNKNIAIAVEELNLGMGVGSQRAAISKSYLEDTYSVVRDHTSSLI 122
           L+++++TGG   A+ +N  +AIA ++  L MGVGSQR  + +     T+ V       L+
Sbjct: 69  LLISSMTGGTETAQRINCRLAIAAQKYRLAMGVGSQRVMLRQPETTPTFDVRDLAPDILL 128

Query: 123 IGNLGAVNFVEDSWDEEIISKSVEMIDADAMAIHFNPLQEAIQPEGDVNFKG-LNILKEI 181
           + NLGAV         E   + V+ + ADA+ +H NPLQE IQ EGD +F+G L  + E+
Sbjct: 129 LANLGAVQLNYGVTPAE-AQQLVDRLGADALILHLNPLQECIQAEGDTDFRGLLGRIGEL 187

Query: 182 ISNYNKIHGKIPFIAKQVGEGFSKKDAIFLKEIGFDAIDVGGSGGTSWAAVELYRIKDEE 241
            +  +     +P I K+VG G S   A  L   G  A+DV G+GGTSW+ VE  R  D  
Sbjct: 188 CAALS-----VPVIVKEVGNGLSAMVAAQLLSAGVAALDVAGAGGTSWSRVEGQRAVDPL 242

Query: 242 QKNFSNQYFNWGIPTAASILEVNS-AFSGPIIATGGIRTGIDIAKSISIGANCCGTALPI 300
            +   +++ +WGIPTA S+ +V   + + P+IA+GGIR G+D AK+I++GA+  G A P 
Sbjct: 243 LRRLGDRFGDWGIPTAESLQQVRQVSATVPLIASGGIRHGLDAAKAIALGADLVGLARPF 302

Query: 301 LKAALKSSEAVTTVLERMIKELKTTMFLT 329
           L AA +S E +   +  ++ EL+   F T
Sbjct: 303 LVAADQSEEVLDQWITELLAELRIVRFCT 331