Pairwise Alignments

Query, 360 a.a., helix-turn-helix domain-containing protein from Methanococcus maripaludis S2

Subject, 360 a.a., hypothetical protein from Methanococcus maripaludis JJ

 Score =  697 bits (1798), Expect = 0.0
 Identities = 344/360 (95%), Positives = 355/360 (98%)

Query: 1   MEIIYNKPEIYATNDIWIQPVSRSSVLESDVVGNCKIINDIPILRVLGSPSLKKTVLNIL 60
           MEIIYNKPEIYATNDIWIQPVSRSSVLESDVVGNCKIINDIPILRVLGSPSLKKTVLNIL
Sbjct: 1   MEIIYNKPEIYATNDIWIQPVSRSSVLESDVVGNCKIINDIPILRVLGSPSLKKTVLNIL 60

Query: 61  HVLKDKMTIFKNNFEIKGMDNIFKYLNDVYFDKSVNNYYRAKKAWYRVIGDLFEDVNNWN 120
           HVLKDKMT+FKNNFEIKGMDNIFKYLNDVYFDKSVNNYYRAKKAWYRVIGDLFEDVNNWN
Sbjct: 61  HVLKDKMTLFKNNFEIKGMDNIFKYLNDVYFDKSVNNYYRAKKAWYRVIGDLFEDVNNWN 120

Query: 121 FKKVMGKLITILKVLNPILVFDLHDVSKWNHLKTFQRFVQFLKNEGISIVLRCPFEAYSY 180
           FKKVMGKLITILKVLNPILVFDLHDVSKWNHLKT+ RF+QFLKNEGISIVLRCPFEAYSY
Sbjct: 121 FKKVMGKLITILKVLNPILVFDLHDVSKWNHLKTYNRFIQFLKNEGISIVLRCPFEAYSY 180

Query: 181 LKNNFENYKTNSVAAVIYYAKTKGHLISEKVSEELLKISCGNLRIIDLILANSKRDLKNM 240
           LKNNF+N+KTNSVAAVIYYAK KGHLISEKVSEELLKISCGNL+IIDLILANSKRDLKNM
Sbjct: 181 LKNNFDNHKTNSVAAVIYYAKNKGHLISEKVSEELLKISCGNLKIIDLILANSKRDLKNM 240

Query: 241 RDLKINWKKIIPEVLPKKYKNIVQKIFLLKKFNIKEISDMLEYSSSTVYNYLNELVGLNI 300
           RDLKINWKKIIPEVLPKKYKNIVQKIFLLKKFNIKEI+ MLEYSSSTVYNYLNELVGLNI
Sbjct: 241 RDLKINWKKIIPEVLPKKYKNIVQKIFLLKKFNIKEIAGMLEYSSSTVYNYLNELVGLNI 300

Query: 301 IKKRKVNKNILFKLDVDKKTAFDIIQSNVDFKDIFFEINDFKNINLKKRTEIFNGFLIFG 360
           IKKRKVNKNILFKLD+DKKTA DI+QSNV FKDIFFEIN+FK+INLKKRTEIFNGFLIFG
Sbjct: 301 IKKRKVNKNILFKLDIDKKTALDIVQSNVSFKDIFFEINNFKDINLKKRTEIFNGFLIFG 360