Pairwise Alignments

Query, 350 a.a., radical SAM protein from Methanococcus maripaludis S2

Subject, 341 a.a., 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB from Methanococcus maripaludis JJ

 Score = 79.3 bits (194), Expect = 1e-19
 Identities = 61/242 (25%), Positives = 110/242 (45%), Gaps = 19/242 (7%)

Query: 37  CNLDDPCKFCFMS--TQKEKIKDPLKARRKPESILAESILMKRIGWKLEFISGGYGYKTE 94
           C++   CK+C  +  T  E    P   R   + I + S+ ++  G K    S G+GY  +
Sbjct: 72  CSVTPKCKYCGFAAGTSSEGYVKPF--RSDDDQIKSSSVAIENSGIKRVSCSSGHGYNGK 129

Query: 95  ELNDTIEMVSYIQQAKQYLNVGIIDFENLNLN----NIEGVVGAVETVNPKLHEELCPGK 150
           E+   ++ V  +   +  +N G    E   L     NI+ +   +ET N  + + + PG+
Sbjct: 130 EVIRALKAVKSVSNLEVLVNAGADLTEECILELKKYNIDTICCNLETTNKTVFKSVKPGE 189

Query: 151 PLSNTKEMLKKAKDMGLKTGITIILGMGETEKDIDLLLNLIEELNLDRITFYSLNPQDET 210
            L +   + K  K  G++    +++G+GET +D    L  ++EL+++ I     NP  ET
Sbjct: 190 NLEDRINVCKMVKKHGVELSSGLLIGIGETYEDRVEHLFFLKELDVEEIPIMGFNPYKET 249

Query: 211 VFQGKTSVTTLEYMNWVSTVRLNFPKMKIITGTWVDKLTNIGP------LVMAGSNVITK 264
             +     + +E    ++ VRL FP ++I + T       +GP      L+   SN+ T 
Sbjct: 250 PMETCPKCSAIEQAKTIAIVRLLFPDIRITSPT-----PTMGPELAQFALLGGASNIATV 304

Query: 265 FP 266
            P
Sbjct: 305 IP 306