Pairwise Alignments

Query, 389 a.a., tRNA pseudouridine(13) synthase TruD from Methanococcus maripaludis S2

Subject, 355 a.a., pseudouridylate synthase (RefSeq) from Shewanella loihica PV-4

 Score = 83.2 bits (204), Expect = 1e-20
 Identities = 65/202 (32%), Positives = 95/202 (47%), Gaps = 24/202 (11%)

Query: 4   RQKHEDFIVNEILEYELNDYGNYFLYKLQKNGIENLKAISYLSKNFEVPTKEIGYCGLKD 63
           R  + DFIV EIL +     G + +  ++K G+        LS    V  KE+ + G KD
Sbjct: 18  RTYNSDFIVQEILPFLPTGEGEHHMLHIRKEGLNTADVARMLSSFAGVHPKEVTFAGQKD 77

Query: 64  RHAITTQY--VSIPKEYGKLSLDEDNLKLEYVGTIE-----KPLKIGRLYGNRFEIIARA 116
           RHAIT Q+  V IP   GK   D  +L  E +  +      K L+ G L GNRF +  RA
Sbjct: 78  RHAITEQWFGVRIP---GKSMPDWQSLNSEQLTVLSSARHGKKLRTGALAGNRFTLTLRA 134

Query: 117 V-DKDEFLKIADNIRNLSSGAPNYYDDQRFGSVFNGKFIAKEILKGN-----------YE 164
           V D D  ++  + I+  ++G PNY+ +QRFG         +++L G            Y 
Sbjct: 135 VSDMDALVRRIELIK--ATGVPNYFGEQRFGHDGKNLIFGRQMLSGKKKVKDRNKRSIYL 192

Query: 165 EVVKILLTSYTKSEKKQLKDLK 186
             V+  L +   SE+ +L  LK
Sbjct: 193 SAVRSYLFNQVVSERLRLHQLK 214



 Score = 33.5 bits (75), Expect = 1e-05
 Identities = 34/168 (20%), Positives = 75/168 (44%), Gaps = 26/168 (15%)

Query: 231 KYVDNRLKELFISAYQSYLWNECLKEFLK--EVIPKENRIYVDYSCGTFLFYENIEEELF 288
           K  D   + +++SA +SYL+N+ + E L+  ++   +    +     ++      +E L+
Sbjct: 181 KVKDRNKRSIYLSAVRSYLFNQVVSERLRLHQLKTLDGDCVMLAGSKSYFVANPWDESLY 240

Query: 289 DKLKEMDFPTIVSDVEYTDPEKRIIKAILKKERIKI---------SDFEKLDFGKLKYTK 339
            +L E       +D++ + P      A+ + E +            D   L+   L   +
Sbjct: 241 GRLAE-------NDIQLSAPMWGRGLALSEAEALAFEQGVCGQYPEDLAGLEQAGLNQER 293

Query: 340 RPIISIPEDVNTGKFKSDELNSKKYKIDLEFSLKKGSYATIILKRVFN 387
           RP++  P+ ++  + + D L        ++F+L  GS+AT +L+ + N
Sbjct: 294 RPLLLAPQQLSY-EIQEDTL-------VIKFALPAGSFATSVLRELVN 333