Pairwise Alignments

Query, 389 a.a., tRNA pseudouridine(13) synthase TruD from Methanococcus maripaludis S2

Subject, 430 a.a., tRNA pseudouridine(13) synthase TruD from Methanococcus maripaludis JJ

 Score = 92.0 bits (227), Expect = 3e-23
 Identities = 105/407 (25%), Positives = 183/407 (44%), Gaps = 78/407 (19%)

Query: 8   EDFIVNEIL----------EYELND----YGNYFLYKLQKNGIENLKAISYLSKNFEVPT 53
           EDFIV EI           E    D    +G++  + ++K     + A+  + +  +   
Sbjct: 64  EDFIVEEITPKGTVLEVGKEIGFEDVEKWHGSFIHFTVEKTNWNTMDALKQIVRATKTKR 123

Query: 54  KEIGYCGLKDRHAITTQYVSIPKEYG--KLSLDEDNLK---LEYVGTIEKPLKIGRLYGN 108
           K  G+ G KD+ A+TTQ       +G  K  L+  N+K   +  V    K L++G L+GN
Sbjct: 124 KNFGFAGTKDKFAVTTQRFGC---FGLKKEQLENINIKDIVIRDVQKSNKKLRMGDLWGN 180

Query: 109 RFEIIARAVD--KDEFLKIADNIRNLSSGAPNYYDDQRFGSV-----FNGKFIAKEILKG 161
           +F I  R ++  KDE  +I+D   +      NYY  QRFG V       GKFI +   + 
Sbjct: 181 KFTIKIRDLNLSKDEIKRISDLKLDY---VLNYYGIQRFGLVRPITHIVGKFIYERDFES 237

Query: 162 NYEEVVKILLTSYTKS-EKKQLKDLKRFIAKNWGNWDECLEYIDKKQIRSKMFRNMVKSL 220
            +       ++    S E ++L D+        G + + L+  ++     K    +++  
Sbjct: 238 AFYTYCGTPISETGDSLEARKLVDM--------GEFKKALKLFNRNHDYEK---RLIQQY 286

Query: 221 TYENDFKKAFKYVDNRLKELFISAYQSYLWNECLKEFLKEVIPKENRIYVDYSCGTFLFY 280
               DFK AF  +  +L  +F++AYQ+YL+NE + +              DY       +
Sbjct: 287 LKYKDFKMAFTALPPQLNSMFVNAYQAYLFNEMINK------------RFDYG------F 328

Query: 281 ENIEEELFDKLKEMDFPT---IVSDVEYTDP-EKRIIKAILKKERIKISDFEKLDFGKLK 336
           + +E ++     E + PT   I  D +++   +  I K I+++E + +  F+  DFG   
Sbjct: 329 DALEGDIL----EDNTPTGTLIGYDTKFSGGIQGEIEKEIVERENLDLKKFKIEDFGNFY 384

Query: 337 YTKRPIISIPEDVNTGKFKSDELNSKKYKIDLEFSLKKGSYATIILK 383
            T+R +++   D     FKS   N      +L F L++G+YATI+ +
Sbjct: 385 GTRRKMVTPIYD-----FKSRFENE---IFELSFKLERGNYATIVTR 423