Pairwise Alignments

Query, 566 a.a., arginine--tRNA ligase from Methanococcus maripaludis JJ

Subject, 551 a.a., arginyl-tRNA synthetase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  201 bits (510), Expect = 8e-56
 Identities = 173/607 (28%), Positives = 271/607 (44%), Gaps = 97/607 (15%)

Query: 1   MDVENLIITTLKDKVKEL-TGNEMDIRLDEPPAINLGDYSTNISFRLAKELKKAPKMIAE 59
           M  +  ++  L+D VK++         +D P A   GD + NI+  LAK+  + P+ +A 
Sbjct: 1   MRAKKQLLAALQDIVKDMGLAWPEKATIDTPKATGFGDLAANIALVLAKQAGQNPRELAT 60

Query: 60  DIANSLSILGIEKIEAVN----GYINFFMNYS-DFSKETVSKITSEKENFGKLEK-RNEK 113
            IA++L     + I A++    G++N  + YS DF +ET+ +       FG  +     K
Sbjct: 61  RIADALRNRDAD-ITAIDIAGPGFLN--VTYSQDFWRETILRAQEAGSAFGSSDTGAGRK 117

Query: 114 VILEHTSANPNGPFHIGHGRNMVIGDSLKRILIASGYDVETQYYVNDMGRQEAIVVFGNE 173
           V +E+ SANP GP HIGHGR   +GDSL RI+  +GYDV T+YY+ND GRQ  ++     
Sbjct: 118 VQVEYVSANPTGPLHIGHGRGAAVGDSLARIMRFAGYDVSTEYYINDAGRQMRLLGL--- 174

Query: 174 KFELDKSKKADHGIGEVYVETNKLLAENEELEQEILNLMKNYESACESGIENELTEK--- 230
                           V+V   +L      L ++       Y       I  EL EK   
Sbjct: 175 ---------------SVWVRAKELAGRPVTLPEDF------YRGDYIKDIARELMEKEPG 213

Query: 231 -------------FKNAVNYSLGGFKETLSTLNIYHDKFVWESEFVKSGMVREVINRLMN 277
                        F  A++  L G K+ L+   + H  +  E   V+ G V +  NRL  
Sbjct: 214 LLDLDDAAGEDRCFAYAMSSILDGIKQDLADFRVEHQVWFSERSLVEGGAVEKTFNRLKE 273

Query: 278 TGKVVE-DEVYRLDLSDYGIEKKLVLARLNGTSLYSTRDIAYHINKME-NCDFAVNLLGA 335
            G   E D       +D+G +K  VL + +GT  Y + DIAYH NK +   D  V++ GA
Sbjct: 274 AGLAFEQDGALWFRTTDFGDDKDRVLRKSDGTLTYFSSDIAYHDNKYDRGFDLVVDIWGA 333

Query: 336 DHKLTAVMVNKTLALLGYNEA--EVVFYEFISLPEG----SMSTRRGRFISMDELFEEAK 389
           DH      +   +A LG      +VV  + ++L  G    +MSTR G+F           
Sbjct: 334 DHHGYIPRMRAAVAALGRKPEAFDVVLIQLVNLLRGGELVAMSTRAGQF----------- 382

Query: 390 SRAAEEVRKRGVAQSEEEIEEIAKKIAVGAVRYNIVRIAPEKPMVFRWDEALDFEKVGCP 449
                           E + ++ K+    A R+  +    + P+ F   E +    +  P
Sbjct: 383 ----------------ETLADVVKETGADAARFMFLSRKSDSPLDFDL-ELVKQRTMDNP 425

Query: 450 V--IQYAHAR-CS-------RILENVENISNDNLFAYEMNENEKTIVKLLSKLPKIVEKA 499
           V  +QYAHAR CS       R +E    +   +L A    ++E  +++LL +  + V  A
Sbjct: 426 VYYVQYAHARVCSVLRKAAERGIEMPAQLDGASL-APLSGDDEMELLRLLDRFEETVAGA 484

Query: 500 AEVRKPQIVANYVLDIAQGFNKFYANCPVLKEENETVRTSRLAIVSTTKTVLENTLDLLG 559
           A    P  +++Y++++A   + +YA  P+L    + V   RLA++     VL N L LLG
Sbjct: 485 ATALAPHHISHYLMEVAGALHSYYARQPILNATEQDVIVPRLALLRAVGCVLANGLSLLG 544

Query: 560 IEMPGKM 566
           +  P  M
Sbjct: 545 VSAPESM 551