Pairwise Alignments

Query, 644 a.a., N-6 DNA methylase from Methanococcus maripaludis JJ

Subject, 540 a.a., Possible type I restriction/modification system DNA methylase HsdM (M protein) (DNA methyltransferase) from Mycobacterium tuberculosis H37Rv

 Score = 55.5 bits (132), Expect = 6e-12
 Identities = 66/311 (21%), Positives = 128/311 (41%), Gaps = 42/311 (13%)

Query: 262 AIIKDTPKLNEIEPKL-KKTPLKHYTEYLYNKIYKSIRYIQSSE----DYLGRFYGEFM- 315
           A++K  P L    P+L  K  +          ++ S R+ +  E    D +G  Y  F+ 
Sbjct: 131 AVMKANPTLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLG 190

Query: 316 SYSGGDGQTLGIVLTPKHITELFCDLVEVKPNDIVFDPCCGTAGFLIASMHNMLKQTSK- 374
           +++  +G+  G   TP  + ++  +++E      V+DPCCG+ G  +        QT K 
Sbjct: 191 NFARAEGKRGGEFFTPPSVVKVIVEVLEPSSGR-VYDPCCGSGGMFV--------QTEKF 241

Query: 375 -KSEQRNIRQNQLHGFELQPYMFTIATTNMILRGDGKSNL---INEDFLKQDPNKIQLKQ 430
                 + +   ++G E     + +A  N+ + G     L    ++ F +     +Q+  
Sbjct: 242 IYEHDGDPKDVSIYGQESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDY 301

Query: 431 PTVGMMNPPYS----QGSKKDPTLY---------EIAFTEHLLDSLTVGARCIVIIPQSS 477
               M N P++      +++DP              A+ +H+L  L  G R  V++   S
Sbjct: 302 V---MANLPFNIKDWARNEEDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMANGS 358

Query: 478 VTGKTREEQSIKENILKKHTLEGVITLNKDTFYGVGVMPCIAIF----TAGEPHLNDK-- 531
           ++  +  E  I+  I++   +  ++ L    F   G+  C+  F     AG+    D+  
Sbjct: 359 MSSNSNGEGDIRAQIVEADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCG 418

Query: 532 ECKFIDFRDDG 542
           +  FID R+ G
Sbjct: 419 QVLFIDARELG 429