Pairwise Alignments

Query, 644 a.a., N-6 DNA methylase from Methanococcus maripaludis JJ

Subject, 574 a.a., type I restriction-modification system, M subunit (RefSeq) from Shewanella sp. ANA-3

 Score = 67.0 bits (162), Expect = 2e-15
 Identities = 61/270 (22%), Positives = 116/270 (42%), Gaps = 33/270 (12%)

Query: 271 NEIEPKLKKTPLKHYTEY-LYNKIYKSIRYIQSSEDYLGRFYGEFMSYSGGDGQTLGIVL 329
           N++  K  +  L H+++Y L N+ ++    + ++ +YL + + +     GG+        
Sbjct: 131 NKLSDKKLRDLLSHFSKYRLRNEDFERPDLLGTAYEYLIKMFADSAGKKGGE------FY 184

Query: 330 TPKHITELFCDLVEVKPNDIVFDPCCGTAGFLIASMHNMLKQTSKKSEQRNIRQNQLHGF 389
           TP  +  L   L++ K    ++DP  G+ G L+ + + +       +   N     L G 
Sbjct: 185 TPSEVVSLLVALLKPKAGMRIYDPTSGSGGMLVQTRNYLA------AHGENPGNLSLFGQ 238

Query: 390 ELQPYMFTIATTNMILRGDGKSNLINEDFLKQDPNKIQLKQPTVGMM--NPPYS------ 441
           E+    + I   NM L G   +++   D L++  +    +  T   +  NPP+S      
Sbjct: 239 EMNLNTWAICKMNMFLHGVLSADIRKGDTLREPKHTEGGELMTFDRVIANPPFSLAKWGK 298

Query: 442 -----QGSKKDP------TLYEIAFTEHLLDSLTVGARCIVIIPQSSVTGKTREEQSIKE 490
                 G  + P         ++AF +H++ S        V++P   V  +   E++I++
Sbjct: 299 DECDNDGFGRFPYGTPPKDAGDLAFVQHMIASTNAEGMVGVVMPHG-VLFRGSSEKAIRQ 357

Query: 491 NILKKHTLEGVITLNKDTFYGVGVMPCIAI 520
            IL+   LE VI L    FYG G+  C+ I
Sbjct: 358 GILEDDLLEAVIGLPSGLFYGTGIPACLLI 387