Pairwise Alignments

Query, 644 a.a., N-6 DNA methylase from Methanococcus maripaludis JJ

Subject, 874 a.a., type I restriction-modification system, M subunit (RefSeq) from Shewanella sp. ANA-3

 Score = 49.7 bits (117), Expect = 6e-10
 Identities = 55/247 (22%), Positives = 97/247 (39%), Gaps = 38/247 (15%)

Query: 305 DYLGRFYGEFMS-YSGGDGQTLGIVLTPKHITELFCDLV--EVKPNDIV--FDPCCGTAG 359
           D LG  Y   +  ++   G+  G   TP  ++ L   ++  E+K  D +  +DP  G+  
Sbjct: 163 DVLGYIYEYLIEKFAANAGKKAGEFYTPHEVSVLMSHIIAHELKHKDTIEIYDPTSGSGS 222

Query: 360 FLIASMHNMLKQTSKKSEQRNIRQNQLHGFELQPYMFTIATTNMILRGDGKSNLI--NED 417
            LI     + K    K       Q      EL+   + +   N+I+RG   SN+   N D
Sbjct: 223 LLINIGEAVEKYAKSKDSITYYAQ------ELKANTYNLTRMNLIMRGIKASNIKTRNGD 276

Query: 418 FLKQD------------------------PNKIQLKQPTVGMMNPPYSQGSKKDPTLYEI 453
            L+ D                        P   Q   P+    +P YS+      T  + 
Sbjct: 277 TLEDDWPYFDENDPQGTYHALYVDAVVSNPPYSQAWDPSFKDSDPRYSRFGLAPKTKADF 336

Query: 454 AFTEHLLDSLTVGARCIVIIPQSSVTGKTREEQSIKENILKKHTLEGVITLNKDTFYGVG 513
           AF  H L  L       +++P   V  +  EE  I++ +++++ ++ +I L  + F+G G
Sbjct: 337 AFLLHDLYHLKPDGIMTIVLPH-GVLFRGGEEGEIRKQLIEQNHIDAIIGLPANIFFGTG 395

Query: 514 VMPCIAI 520
           +   I +
Sbjct: 396 IPTVILV 402