Pairwise Alignments

Query, 254 a.a., transporter substrate-binding domain-containing protein from Methanococcus maripaludis JJ

Subject, 240 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis S2

 Score =  156 bits (394), Expect = 4e-43
 Identities = 87/244 (35%), Positives = 140/244 (57%), Gaps = 6/244 (2%)

Query: 3   RHSIGITILLFLLSISIISGCISSQNTMKRGTLTVGVCAQYPPTIYEENGNLAGFDFDLM 62
           ++++  ++LL + S + IS   S+  T+K G LTVGV    PP +YEENG L G++ +L+
Sbjct: 2   KNAVIFSVLLVITSCACISSD-SNTTTLKDGVLTVGVFKYVPPAVYEENGELKGYEVELI 60

Query: 63  NEIAKRMKLNTNFKIYNSKSELFDALEKNEVDC-IGSRTVNYERRKFIDFTRVYYYDSVR 121
           +EIA+RM L   +K Y   S+L +A+  NEVDC I    V  ER K + F+R Y    + 
Sbjct: 61  SEIAERMDLKVEYKEY-MFSDLLNAVANNEVDCAISDIAVTPEREKIVSFSRAYSKTDII 119

Query: 122 VAVPESSSVTMLKELKGKNLGVIEGSVSSELVESYLTNVGCKCIYYDTPENLTYAVENGE 181
           + VP+ S +  L ++ G+ +GV  G++  +     L ++  +   Y+  + L  A+E+G 
Sbjct: 120 LVVPKDSDIEKLTDIIGQKVGVTAGTIDDDKSSELLKSIDFQVCRYNNHDELYDALESGN 179

Query: 182 VDAVIGHEMYIEHISTKCNVQKRYLDEKLSVSYWAIPINKNNPNLRNSINDVLLEMENDG 241
           VDA+I  E   E +    N    YLDE ++  Y  I +NK+N  LR  IND++LE+E +G
Sbjct: 180 VDAIISEENNFESVQ---NSSINYLDEPIATVYCGIAVNKDNKELRLKINDIILELEQEG 236

Query: 242 TLDE 245
             ++
Sbjct: 237 YFNQ 240