Pairwise Alignments

Query, 230 a.a., GTP-binding protein EngB from Methanococcus maripaludis JJ

Subject, 494 a.a., ribosome biogenesis GTPase Der from Vibrio cholerae E7946 ATCC 55056

 Score = 41.6 bits (96), Expect = 3e-08
 Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 31/143 (21%)

Query: 38  PKVIVMGRSNVGKST-FVKLVTGKNVRVGKKPGVT-------LKITEYDMGTYILVDLPG 89
           P V ++GR NVGKST F +L   ++  V   PG+T        K+ E++   +I++D  G
Sbjct: 3   PVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHE---FIVIDTGG 59

Query: 90  F-GFMEGIEKKAQEKIKDEIIHYVEDNKDAIAASIHILDAKSFIDIVERWGNKGEVPIDL 148
             G  EG+E K  ++    I     D  D +   +               G  G    D 
Sbjct: 60  IDGSEEGVETKMAQQSLAAI-----DEADVVLFMVD--------------GRAGLTVADE 100

Query: 149 EMADFLEELELNPIFVVNKMDKI 171
            +A  L  +E   I VVNK+D I
Sbjct: 101 AIAQHLRRIEKPAILVVNKVDGI 123



 Score = 36.2 bits (82), Expect = 1e-06
 Identities = 43/193 (22%), Positives = 79/193 (40%), Gaps = 23/193 (11%)

Query: 3   ENTNSEENNNNIQSQNMDIQKFKKYIRTEKKADERPKVIVMGRSNVGKSTFVKLVTG-KN 61
           E+  +EE+    Q +  + +   +Y R +   D   K+ ++GR NVGKST    + G + 
Sbjct: 174 EDLTNEEDPEEEQLEYSEEEAEAEYKRLQ---DLPIKLAIIGRPNVGKSTLTNRILGEER 230

Query: 62  VRVGKKPGVTLKI----TEYDMGTYILVDLPGFGFMEGIEKKAQEKIKDEIIHYVEDNKD 117
           V V   PG T        + D   Y+L+D  G    + I +  ++    + +  +ED   
Sbjct: 231 VVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRRKRINETVEKFSVVKTLQAIEDANV 290

Query: 118 AIAASIHILDAKSFIDIVERWGNKGEVPIDLEMADFLEELELNPIFVVNKMDKIKNSEWD 177
            +     ++DA+  I              DL +  F      + +  VNK D +     +
Sbjct: 291 VLL----VVDARENIS-----------DQDLSLLGFALNSGRSIVIAVNKWDGLSFDVKE 335

Query: 178 NHLDKVSETLGFL 190
           +   ++   LGF+
Sbjct: 336 HVKKELDRRLGFV 348