Pairwise Alignments

Query, 161 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

Subject, 580 a.a., iron-sulfur cluster-binding protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 45.1 bits (105), Expect = 2e-09
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 114 CVMCLVCTKNCPFGAISESDDN--ISFDMDKCVLCGHCEEICPAKAIKL 160
           C +C+ C   CP  A+ +  D   + F    CV CG CE  CP K I L
Sbjct: 450 CTLCMSCVAICPTAALKDGGDEPKLLFTEQNCVQCGLCEAACPEKVISL 498



 Score = 42.7 bits (99), Expect = 1e-08
 Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 23/132 (17%)

Query: 30  KIEINPELCILCNRCLEVCPVTAI--SSNFPEVPDIDNKCVYCNTCVETCPVDAIKITKT 87
           K+ +  + C LC  C+ +CP  A+    + P++   +  CV C  C   CP   I +   
Sbjct: 442 KVTVATDNCTLCMSCVAICPTAALKDGGDEPKLLFTEQNCVQCGLCEAACPEKVISL--- 498

Query: 88  RVRVEQGNLIIENRLKSKKLDYNRK-KCVMCLVCTKNCPFGAIS---------ESDDNIS 137
              V Q N    +R  ++ L   +  +CV C       PF   S               S
Sbjct: 499 ---VPQVNFDAPSRQAARVLKEEKPFECVRC-----GAPFATQSMVHRMLDMVGMHSAFS 550

Query: 138 FDMDKCVLCGHC 149
            ++++  +CG C
Sbjct: 551 ANIERLKMCGDC 562



 Score = 37.4 bits (85), Expect = 4e-07
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 31  IEINPELCIL-------CNRCLEVCPVTAISSNFPEVPDIDNKCVYCNTCVETCPVDAI 82
           +++N +LC         CNRCL  CP  AI S   ++      C    +C   CP  AI
Sbjct: 205 VKVNADLCAHNRNGLNGCNRCLNFCPADAIQSVEKKIEIDPYLCHGAGSCTNACPTGAI 263



 Score = 33.9 bits (76), Expect = 5e-06
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 16/74 (21%)

Query: 57  FPEVPDIDNKCVYCNTCVETCPVDAIKITKTRVRVEQGNLIIENRLKSKKLDYNRKKCVM 116
           F +V    + C  C +CV  CP  A+K        + G+          KL +  + CV 
Sbjct: 440 FGKVTVATDNCTLCMSCVAICPTAALK--------DGGD--------EPKLLFTEQNCVQ 483

Query: 117 CLVCTKNCPFGAIS 130
           C +C   CP   IS
Sbjct: 484 CGLCEAACPEKVIS 497



 Score = 33.5 bits (75), Expect = 6e-06
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 25  QYISNKIEINPELCILCNRCLEVCPVTAISSNFP 58
           Q +  KIEI+P LC     C   CP  AIS + P
Sbjct: 235 QSVEKKIEIDPYLCHGAGSCTNACPTGAISYDLP 268



 Score = 32.7 bits (73), Expect = 1e-05
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 7/37 (18%)

Query: 123 NCPFGAISESDDNISFDMDKCVLCGHCEEICPAKAIK 159
           N PFG ++ + DN       C LC  C  ICP  A+K
Sbjct: 437 NIPFGKVTVATDN-------CTLCMSCVAICPTAALK 466



 Score = 32.3 bits (72), Expect = 1e-05
 Identities = 17/53 (32%), Positives = 20/53 (37%)

Query: 109 YNRKKCVMCLVCTKNCPFGAISESDDNISFDMDKCVLCGHCEEICPAKAIKLE 161
           +NR     C  C   CP  AI   +  I  D   C   G C   CP  AI  +
Sbjct: 214 HNRNGLNGCNRCLNFCPADAIQSVEKKIEIDPYLCHGAGSCTNACPTGAISYD 266



 Score = 32.3 bits (72), Expect = 1e-05
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 18/61 (29%)

Query: 70  CNTCVETCPVDAIKITKTRVRVEQGNLIIENRLKSKKLDYNRKKCVMCLVCTKNCPFGAI 129
           CN C+  CP DAI+  +                  KK++ +   C     CT  CP GAI
Sbjct: 222 CNRCLNFCPADAIQSVE------------------KKIEIDPYLCHGAGSCTNACPTGAI 263

Query: 130 S 130
           S
Sbjct: 264 S 264