Pairwise Alignments

Query, 161 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

Subject, 656 a.a., 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 48.1 bits (113), Expect = 3e-10
 Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 23/135 (17%)

Query: 38  CILCNRCLEVCPVTAISSNF----------PEVPDIDNKC-VYCNTCVETCPVDAIK-IT 85
           C+ C  C   CP   +   +          P V      C   C+ C   CP  AI+ + 
Sbjct: 423 CVRCGLCAAACPTNTLQPAWLASGALGMFSPVVTPARGFCDPACHACARACPTTAIRRLA 482

Query: 86  KTRVRVEQGNLIIENRLKSKKLDYNRKKCVMCLVCTKNCPFGAISESDDN------ISFD 139
             R   + G   +   L+   L + +KK   CLVC + CP+ AI+   +          D
Sbjct: 483 DERTFAKIGTAEV---LRDHCLAWAKKK--RCLVCDEVCPYDAIALKPEPGYTVGVPHVD 537

Query: 140 MDKCVLCGHCEEICP 154
             +C  CG CE+ CP
Sbjct: 538 PARCAGCGFCEKHCP 552



 Score = 41.6 bits (96), Expect = 3e-08
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 38  CILCNRCLEVCPVTAISSNFPEVPDIDNKCVYCNTCVETCPVDAIKITKTRVRVEQGNLI 97
           C  C  C   CP  AI +  P   D   +C+ C  C + CPVDA++   + V    G ++
Sbjct: 254 CTACGACARRCPAGAIPAAAPRATD-HAECLKCLRCADVCPVDAVRFAFSDV---PGVVM 309

Query: 98  IENRLKSKKLD 108
            E + K K+ D
Sbjct: 310 PEMQEKPKQPD 320



 Score = 38.9 bits (89), Expect = 2e-07
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 114 CVMCLVCTKNCPFGAISESDDNISFDMDKCVLCGHCEEICPAKAIK 159
           C  C  C + CP GAI  +    + D  +C+ C  C ++CP  A++
Sbjct: 254 CTACGACARRCPAGAIPAAAPRAT-DHAECLKCLRCADVCPVDAVR 298



 Score = 34.3 bits (77), Expect = 4e-06
 Identities = 31/116 (26%), Positives = 44/116 (37%), Gaps = 23/116 (19%)

Query: 61  PDIDNKCVYCNTCVETCPVDAIKITKTRVRVEQGNLIIENRLKSKKLDYNRKKC-VMCLV 119
           PD   +CV C  C   CP + ++       +  G L     + S  +   R  C   C  
Sbjct: 417 PDFLARCVRCGLCAAACPTNTLQ----PAWLASGAL----GMFSPVVTPARGFCDPACHA 468

Query: 120 CTKNCPFGAISESDDNISFD--------MDKCVL------CGHCEEICPAKAIKLE 161
           C + CP  AI    D  +F          D C+       C  C+E+CP  AI L+
Sbjct: 469 CARACPTTAIRRLADERTFAKIGTAEVLRDHCLAWAKKKRCLVCDEVCPYDAIALK 524



 Score = 30.8 bits (68), Expect = 5e-05
 Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 19/67 (28%)

Query: 63  IDNKCVYCNTCVETCPVDAIKITKTRVRVEQGNLIIENRLKSKKLDYNRKKCVMCLVCTK 122
           +++ C  C  C   CP  AI     R                     +  +C+ CL C  
Sbjct: 250 VEHACTACGACARRCPAGAIPAAAPRAT-------------------DHAECLKCLRCAD 290

Query: 123 NCPFGAI 129
            CP  A+
Sbjct: 291 VCPVDAV 297