Pairwise Alignments

Query, 161 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

Subject, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 80.9 bits (198), Expect = 2e-20
 Identities = 54/165 (32%), Positives = 70/165 (42%), Gaps = 38/165 (23%)

Query: 27  ISNKIEINPELCILCNRCLEVCPVTAISSNFPEVPDIDN-----------KCVYCNTCVE 75
           I   IE+N   C+LC +C  VCP  AI     EVP+  +            CV C  C E
Sbjct: 104 IKRGIELNQSKCVLCEQCELVCPQCAIDVE-REVPERKSLVLGEITIKKDDCVLCGICAE 162

Query: 76  TCPVDAIKITKTRVRVEQGNLIIENRLKSKKLDYNRKKCVMCLVCTKNCPFGAIS----- 130
            CP DAI++    +     N +  N +   K+D +   CV C VC K CP  AI      
Sbjct: 163 YCPADAIELIPNDM-----NALSLNPIADIKIDLDA--CVYCKVCEKACPHNAIEAICYK 215

Query: 131 --------------ESDDNISFDMDKCVLCGHCEEICPAKAIKLE 161
                         E     + D + CV CG C  ICPA AI++E
Sbjct: 216 CPLASKIKKPELYGEIKGQTNIDKELCVSCGWCANICPADAIEVE 260



 Score = 77.4 bits (189), Expect = 2e-19
 Identities = 48/145 (33%), Positives = 68/145 (46%), Gaps = 27/145 (18%)

Query: 38  CILCNRCLEVCPVTAISS-----------NFPEVPDIDNKCVYCNTCVETCPVDAIKITK 86
           C+ C  C E+CP +AI             + P++ DI  KCV C  C   CP DA+K++ 
Sbjct: 32  CVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKL-DISEKCVLCGMCACACPFDAVKLSI 90

Query: 87  TRVRVEQGNLIIENRLKSKK-LDYNRKKCVMCLVCTKNCPFGAISESDD----------N 135
               + +    +    K K+ ++ N+ KCV+C  C   CP  AI    +           
Sbjct: 91  NDKPITE----MPQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDVEREVPERKSLVLGE 146

Query: 136 ISFDMDKCVLCGHCEEICPAKAIKL 160
           I+   D CVLCG C E CPA AI+L
Sbjct: 147 ITIKKDDCVLCGICAEYCPADAIEL 171



 Score = 70.1 bits (170), Expect = 4e-17
 Identities = 48/156 (30%), Positives = 69/156 (44%), Gaps = 35/156 (22%)

Query: 30  KIEINPELCILCNRCLEVCPVTAIS--------SNFPEVPDI-------DNKCVYCNTCV 74
           K++I+ E C+LC  C   CP  A+         +  P+ P I        +KCV C  C 
Sbjct: 64  KLDIS-EKCVLCGMCACACPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCE 122

Query: 75  ETCPVDAIKITKTRVRVEQGNLIIENRLKSKKLDYNRKKCVMCLVCTKNCPFGAIS--ES 132
             CP  AI + +    V +   ++   +  KK D     CV+C +C + CP  AI    +
Sbjct: 123 LVCPQCAIDVER---EVPERKSLVLGEITIKKDD-----CVLCGICAEYCPADAIELIPN 174

Query: 133 DDN---------ISFDMDKCVLCGHCEEICPAKAIK 159
           D N         I  D+D CV C  CE+ CP  AI+
Sbjct: 175 DMNALSLNPIADIKIDLDACVYCKVCEKACPHNAIE 210



 Score = 62.0 bits (149), Expect = 1e-14
 Identities = 42/158 (26%), Positives = 63/158 (39%), Gaps = 42/158 (26%)

Query: 31  IEINPELCILCNRCLEVCPVTAISSNFPEVP------------------DIDNK-CVYCN 71
           I+I+ + C+ C  C + CP  AI +   + P                  +ID + CV C 
Sbjct: 187 IKIDLDACVYCKVCEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKELCVSCG 246

Query: 72  TCVETCPVDAIKITKTRVRVEQGNLIIENRLKSKKLDYNRKKCVMCLVCTKNCPFGAI-- 129
            C   CP DAI++ K      +G LII+              C  C  C   CP  A+  
Sbjct: 247 WCANICPADAIEVEKPF----EGELIIDE-----------PACNACGACISVCPCNALVF 291

Query: 130 ------SESDDNISFDMDKCVLCGHCEEICPAKAIKLE 161
                  +   N+  + D C+LCG C   CP  A+ ++
Sbjct: 292 PQPEKQGDKVPNVVVNQDVCILCGACTHSCPVDALTVK 329



 Score = 61.6 bits (148), Expect = 1e-14
 Identities = 40/115 (34%), Positives = 53/115 (46%), Gaps = 27/115 (23%)

Query: 64  DNKCVYCNTCVETCPVDAIKITKTRVRVEQGNL--IIENRLKSKKLDYNRKKCVMCLVCT 121
           D  CV C  C E CP  AI         E G L  I +  + + KLD + +KCV+C +C 
Sbjct: 29  DCTCVGCGICSEICPTSAI---------EMGPLGAIFKGDIDAPKLDIS-EKCVLCGMCA 78

Query: 122 KNCPFGAISESDDN---------------ISFDMDKCVLCGHCEEICPAKAIKLE 161
             CPF A+  S ++               I  +  KCVLC  CE +CP  AI +E
Sbjct: 79  CACPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDVE 133



 Score = 55.8 bits (133), Expect = 7e-13
 Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 13/107 (12%)

Query: 27  ISNKIEINPELCILCNRCLEVCPVTAISSNFP---EVPDIDNKCVYCNTCVETCPVDAIK 83
           I  +  I+ ELC+ C  C  +CP  AI    P   E+   +  C  C  C+  CP +A+ 
Sbjct: 231 IKGQTNIDKELCVSCGWCANICPADAIEVEKPFEGELIIDEPACNACGACISVCPCNALV 290

Query: 84  ITKTRVRVEQGNLIIENRLKSKKLDYNRKKCVMCLVCTKNCPFGAIS 130
             +     +QG+       K   +  N+  C++C  CT +CP  A++
Sbjct: 291 FPQPE---KQGD-------KVPNVVVNQDVCILCGACTHSCPVDALT 327



 Score = 51.2 bits (121), Expect = 2e-11
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 8/71 (11%)

Query: 33  INPELCILCNRCLEVCPVTAISSNFPE-----VPDI---DNKCVYCNTCVETCPVDAIKI 84
           I+   C  C  C+ VCP  A+    PE     VP++    + C+ C  C  +CPVDA+ +
Sbjct: 269 IDEPACNACGACISVCPCNALVFPQPEKQGDKVPNVVVNQDVCILCGACTHSCPVDALTV 328

Query: 85  TKTRVRVEQGN 95
            +T++ + + N
Sbjct: 329 KRTKINMTEAN 339



 Score = 42.4 bits (98), Expect = 8e-09
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 10/74 (13%)

Query: 97  IIENRLKSKKLDYNRKKCVMCLVCTKNC--------PFGAISESD-DNISFDM-DKCVLC 146
           I  + ++ + L ++   CV C +C++ C        P GAI + D D    D+ +KCVLC
Sbjct: 15  ISRSGVEKRVLKWDDCTCVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDISEKCVLC 74

Query: 147 GHCEEICPAKAIKL 160
           G C   CP  A+KL
Sbjct: 75  GMCACACPFDAVKL 88