Pairwise Alignments

Query, 161 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

Subject, 672 a.a., 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 52.8 bits (125), Expect = 1e-11
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 31  IEINPELCILCNRCLEVCPVTAISSNFPEVPDI---DNKCVYCNTCVETCPVDAIKIT 85
           + ++PE C LC  C  VCP  A+  N PE P +   ++ CV C  C  TCP  AI +T
Sbjct: 516 VTVDPEACTLCQACTGVCPTGALLDN-PETPMLRFTESACVQCGLCAATCPETAITLT 572



 Score = 42.7 bits (99), Expect = 1e-08
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 114 CVMCLVCTKNCPFGAISESDDN--ISFDMDKCVLCGHCEEICPAKAIKL 160
           C +C  CT  CP GA+ ++ +   + F    CV CG C   CP  AI L
Sbjct: 523 CTLCQACTGVCPTGALLDNPETPMLRFTESACVQCGLCAATCPETAITL 571



 Score = 40.4 bits (93), Expect = 6e-08
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 109 YNRKKCVMCLVCTKNCPFGAISESDDNISFDMDKCVLCGHCEEICPAKA 157
           ++R     C  C   CP GAI+ + D++  D   C  CG C   CP  A
Sbjct: 279 HSRNGITGCTRCLSLCPTGAITPNGDSVQIDPAICAGCGQCAAACPTGA 327



 Score = 37.0 bits (84), Expect = 6e-07
 Identities = 16/41 (39%), Positives = 18/41 (43%)

Query: 41  CNRCLEVCPVTAISSNFPEVPDIDNKCVYCNTCVETCPVDA 81
           C RCL +CP  AI+ N   V      C  C  C   CP  A
Sbjct: 287 CTRCLSLCPTGAITPNGDSVQIDPAICAGCGQCAAACPTGA 327



 Score = 30.8 bits (68), Expect = 5e-05
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 29  NKIEINPELCILCNRCLEVCPVTAISSNFPEVPDI 63
           + ++I+P +C  C +C   CP  A +   P+V  +
Sbjct: 304 DSVQIDPAICAGCGQCAAACPTGAAAYALPDVATV 338



 Score = 30.0 bits (66), Expect = 8e-05
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 16/64 (25%)

Query: 67  CVYCNTCVETCPVDAIKITKTRVRVEQGNLIIENRLKSKKLDYNRKKCVMCLVCTKNCPF 126
           C  C  C   CP  A+               ++N  ++  L +    CV C +C   CP 
Sbjct: 523 CTLCQACTGVCPTGAL---------------LDNP-ETPMLRFTESACVQCGLCAATCPE 566

Query: 127 GAIS 130
            AI+
Sbjct: 567 TAIT 570



 Score = 27.3 bits (59), Expect = 5e-04
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 7/46 (15%)

Query: 113 KCVMCLVCTKNCPFGAISESDDNISFDMDKCVLCGHCEEICPAKAI 158
           K    L   +  PFG+++        D + C LC  C  +CP  A+
Sbjct: 500 KPAQTLPLPQGAPFGSVT-------VDPEACTLCQACTGVCPTGAL 538