Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis JJ

Subject, 256 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score = 99.0 bits (245), Expect = 8e-26
 Identities = 64/250 (25%), Positives = 123/250 (49%), Gaps = 10/250 (4%)

Query: 3   AFSAMFYRQLRRFTR--AKSRVLGSLLNPLVWLVFFGIGWSRAFDFPAAREIFGGVDYLT 60
           AF ++  +++ RFTR   ++ V  ++   L +++F  +  SR            G  Y+ 
Sbjct: 8   AFCSLLGKEINRFTRIWVQTLVPPAITMTLYFIIFGNLIGSRIGQM-------NGFSYME 60

Query: 61  YLIPGVVSMTVFSGSFISGVTVIWDKQFGF-LKETLVAPTSRSEAILGRIMGDSITALIQ 119
           Y++PG++ M+V + S+ +  +  +  +F   ++E LVAP      I G +MG     L+ 
Sbjct: 61  YIVPGLIMMSVITNSYSNVASSFFSSKFQKNIEELLVAPVPNYVIIAGYVMGGVARGLLV 120

Query: 120 GVLIMVLSLFLVSLNPFGMIPVIFTSFILAVAFASVGISLGLKINSQEGFHLIFGLLMQP 179
           G ++  +SL  V L       +I T F+ +V F+  G+   +   + +   ++   ++ P
Sbjct: 121 GAMVTAVSLLFVDLQVDHWGIIIATVFLTSVVFSLGGLINAVFAKTFDDISIVPTFVLTP 180

Query: 180 LIFLSGAFYPIDAMPTWMKILAYLNPLTYAVDSARYFLAGFSRFPIILDVSILIVLSVFL 239
           L +L G FY I  +P + + ++ +NP+ Y V++ RY   G S   I+   ++L+   V L
Sbjct: 181 LTYLGGVFYSISLLPEFWQSVSKINPIVYMVNAFRYGFLGVSDVDIMTSFAVLMAFVVAL 240

Query: 240 VVLAMYTFEK 249
             +A Y   K
Sbjct: 241 YCVAHYLVTK 250