Pairwise Alignments

Query, 688 a.a., hypothetical protein from Methanococcus maripaludis JJ

Subject, 447 a.a., S-layer protein from Methanococcus maripaludis S2

 Score = 63.2 bits (152), Expect = 3e-14
 Identities = 59/231 (25%), Positives = 95/231 (41%), Gaps = 50/231 (21%)

Query: 470 VNVYFDGSNEYYSLNGTNETFNGSFDKSMFSYGEHYAIFEAFDGSGNVNNSEMVAFEISA 529
           V++Y+D   EY     T   F   +D   F  G+  + +  FD      + + +  E   
Sbjct: 201 VSIYYD---EYLESGDTAYFFFEIYDSLEFEDGKSISGYSDFDTE---IDGQTITLEYDN 254

Query: 530 PATSSRSTGN-HYSSDLSDGISSGTIKRAVSNSNIIYGSDVDEG--------YALNLREN 580
           P + S + G  +Y  +L D              N+ Y  D+DEG        +A+ L  +
Sbjct: 255 PKSLSENFGLLNYKVNLVDVNGEDLTAFFTVTQNLNYEYDMDEGTKYFGNNIFAVKLEND 314

Query: 581 VKNGNDYEL------------------------------SGDTIIVGGPEANGFAEKYDS 610
            ++  D EL                              S D I++GGP +N   E   +
Sbjct: 315 EEDDWDDELYLYKNNKKYDKIVDYQGSVQLVDQDELLSASSDLILIGGPVSNKVTESIQN 374

Query: 611 EFEISITNDYPGENKGLIQVKNIEVRDGNIIKTYQVIYIAGSDRFGTQAAL 661
              I +TNDYPGE KG+IQ     + + N  ++  ++ +AGSDR GT+A +
Sbjct: 375 SLNIEVTNDYPGEGKGVIQT----ITNPNNAES-TILVLAGSDREGTKACV 420