Pairwise Alignments

Query, 688 a.a., hypothetical protein from Methanococcus maripaludis JJ

Subject, 1026 a.a., SBBP repeat-containing protein from Methanococcus maripaludis S2

 Score =  246 bits (628), Expect = 4e-69
 Identities = 132/243 (54%), Positives = 173/243 (71%), Gaps = 15/243 (6%)

Query: 446  SVNVLENEVIVSISAEDVE-NDLWGVNVYFDGSNEYYSLNGTNETFNGSFDKSMFSYGEH 504
            S+NV  N+ + ++S+   +   +  V ++FDG+  YY+ N T    NG+++  +      
Sbjct: 796  SLNVSANDSLSNVSSVTAKIGSVRNVTLFFDGN--YYTGN-TGTLSNGNYEIRII----- 847

Query: 505  YAIFEAFDGSGNVNNSEMVAFEISAPA-TSSRSTGNHYSSDLSDGISSGTIKRAVSNSNI 563
                 A D  GNVN++E V   I  PA TSS S+G+HYSSDLSDGI+S  IK  VSNSNI
Sbjct: 848  -----ATDLVGNVNSNETVNITIKVPASTSSGSSGSHYSSDLSDGITSSVIKNTVSNSNI 902

Query: 564  IYGSDVDEGYALNLRENVKNGNDYELSGDTIIVGGPEANGFAEKYDSEFEISITNDYPGE 623
            +YGS++D  YA  L+EN+ N  DYE+SGDTIIVGGP+ N  A KYDS+F ISI+NDYPGE
Sbjct: 903  VYGSEIDGKYAGKLKENLYNSEDYEISGDTIIVGGPKYNVLANKYDSKFGISISNDYPGE 962

Query: 624  NKGLIQVKNIEVRDGNIIKTYQVIYIAGSDRFGTQAALEYFKTLDELPDMPLTVEWTENG 683
            N G+IQV  ++   GNIIK+Y+++YIAGSDR GTQAALEYFKTL+ELP+ P+ VEWTENG
Sbjct: 963  NNGIIQVLKVQDNTGNIIKSYKIVYIAGSDRLGTQAALEYFKTLNELPEGPIMVEWTENG 1022

Query: 684  PVV 686
            PV+
Sbjct: 1023 PVL 1025



 Score = 41.6 bits (96), Expect = 2e-07
 Identities = 60/277 (21%), Positives = 117/277 (42%), Gaps = 52/277 (18%)

Query: 372 WKSEFENSLNTTGKGYYFVNFSNGTETSIISEFGIIKYSSYPDIEEINTLNSYACNKSVV 431
           W S +   +N+ G      N  N   T  +S + I+       ++E              
Sbjct: 371 WNSTYCPGINSWGNAIEVDNSGNAYVTGSMSGYAIVTVKFGIPVDE-------------- 416

Query: 432 FKFYSKTAPEIINSSVNVLENE-----VIVSISAEDVENDLWGVNVYFDGSNEYYSLNGT 486
                 TAPE+   ++N LE       ++++++A D+  D   V    +G+      N T
Sbjct: 417 ------TAPEV---TINTLEKSYNTTSIVINVTATDLNLD--SVIAEINGTE-----NIT 460

Query: 487 NETFNGSFDKSMFSYGEHYAIFEAF--DGSGNVNNSEMVAF--EISAPATSSRSTGNHYS 542
            E  +G+F  S + + E     + +  D SGNVN+SE ++F  +++ P     ++    +
Sbjct: 461 LENISGNFVNSTYEFSEGLNTLKIYANDTSGNVNSSENISFIVDVTNPELRIETSNVSNT 520

Query: 543 SDLSDGI-SSGTIKRAVSNSNIIYGSDVDEGYALNLRENVKNGNDYELS----GDTIIVG 597
           S+L+  + ++  I+   +N +I+     + G  +N   N  NG+ Y+++     D I   
Sbjct: 521 SELTINVTATDNIELNYTNFSIV----DNFGNLVNSTVNETNGS-YQITLSVPADGIYNV 575

Query: 598 GPEANGFAEKYDSEFEISITNDYPGENKGLIQVKNIE 634
              A       ++   I++T D   EN  L+ +  +E
Sbjct: 576 TATAFDMVGNTNTTEAINVTVD---ENAPLVTINTLE 609