Pairwise Alignments

Query, 216 a.a., DNA repair and recombination protein RadB from Methanococcus maripaludis JJ

Subject, 354 a.a., DNA recombination/repair protein RecA from Vibrio cholerae E7946 ATCC 55056

 Score = 55.8 bits (133), Expect = 1e-12
 Identities = 50/207 (24%), Positives = 94/207 (45%), Gaps = 19/207 (9%)

Query: 8   GNIEKKTITQIYGPPGVGKTNICIISMLKAIENGKNVVYIDTEGSLSIERIKQLSGKDCD 67
           G +    I +I+GP   GKT + +  +  A   GK   +ID E +L     K+L G + D
Sbjct: 53  GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKL-GVNID 111

Query: 68  ELLKNIIIYEPSSFEEQSEALEKIFLLENVGLIIIDGIVSLY-RLELCDKINENTK--LN 124
           ELL    + +P + E+  E  + +     V +I++D + +L  + E+  ++ ++      
Sbjct: 112 ELL----VSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQA 167

Query: 125 RMLGKQISNLLKVSRQKNSGILITNQVKDSI-----NGIEPAGGRLLEYWSKSIIKIEKS 179
           RML + +  L    +Q N   +  NQ++  I     N     GG  L++++   + I ++
Sbjct: 168 RMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRT 227

Query: 180 ESIRKLTLEKHRHAKEGENLRFKILQN 206
            +I      K      G   R K+++N
Sbjct: 228 GAI------KEGEEVVGNETRIKVVKN 248