Pairwise Alignments

Query, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis JJ

Subject, 944 a.a., Excinuclease ABC subunit A from Pseudomonas fluorescens FW300-N1B4

 Score = 1025 bits (2649), Expect = 0.0
 Identities = 522/955 (54%), Positives = 698/955 (73%), Gaps = 23/955 (2%)

Query: 4   IIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAYARQ 63
           I+I+GAR HNLKNI LTLPR+ LIV+TG+SGSGKS++AFDT+YAEGQRRYVESLSAYARQ
Sbjct: 4   ILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63

Query: 64  FLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYCPEH 123
           FL +M KPDVD+IEGLSPAI+I+QK+TS NPRSTVGT+TEIYDYLRLLYAR+GIP CP+H
Sbjct: 64  FLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGIPRCPDH 123

Query: 124 NIRIESQSPEKIAEKI-EEEFSETVTILSPIVRQKKGTYQKLFKDLNSEGFARIRVNGEI 182
           +I +E+Q+  ++ + +  +     + +L+P++R++KG +  +F++L ++GF R RVNG +
Sbjct: 124 DIPLEAQTVSQMVDLVLAQPEGSKLMLLAPVIRERKGEHLSVFEELRAQGFVRARVNGRL 183

Query: 183 YRTDDEITLERYKKHDIEIVIDRLTPKDD-HSRLVEACERALERSGGLLIVTGTKNNEEF 241
              D+   L++ KKH I++V+DR   + D   RL E+ E AL+ + G+ +V    +    
Sbjct: 184 CELDELPKLDKQKKHSIDVVVDRFKVRVDLQQRLAESFETALKLADGIALVAPMDDEPGE 243

Query: 242 EKIYSSNLACPICGISFEELQPRMFSFNSPFGACEYCSGLGIKMEFDADLIIPDKNKCIA 301
           E I+S+  ACPICG +  EL+P++FSFN+P GAC  C GLG+K  FD   ++ +    +A
Sbjct: 244 EIIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDTKRLV-NGELTLA 302

Query: 302 DGAVALY--RNFLDGYRSQHLAAVANHFGFTVLTPIKDLSKEQLDILMYGS-PEKIHFKV 358
           +GA+  +  RN    Y  Q L ++A+H+ F++  P  DL  +Q   +++GS  + + FK 
Sbjct: 303 EGAIRGWDRRNV---YYFQMLGSLASHYKFSLEVPFNDLPADQQKFILHGSGSQNVDFKY 359

Query: 359 SNGSGDTEWSQNKPWEGLIPQSIRLYNETKSEYRRKELEKFMKVSLCPKCGGKRLKDKAL 418
            N  GD    ++ P+EG++P   R Y ET+S   R+EL KF+    CP C G RL+ +A 
Sbjct: 360 LNDRGDIV-KRSHPFEGIVPNLERRYRETESASVREELAKFLSTQPCPDCRGTRLRREAR 418

Query: 419 AVKIEDKSIIDLTDLSISKAEEFFNNLKLTDKEYEIAKQVIKEIKSRLKFLNDVGLGYLT 478
            V + +K++  +T+L I  A E+F  LKLT +  EIA +++KEI+ RL+FL +VGL YL+
Sbjct: 419 HVWVGEKTLPAVTNLPIGDACEYFGVLKLTGRRGEIADKILKEIRERLQFLVNVGLDYLS 478

Query: 479 LSRRSGTLSGGEAQRIRLATQIGSNLTGVLYVLDEPSIGLHQRDNQKLIETLHKLRNLDN 538
           L R + TLSGGEAQRIRLA+QIG+ L GVLY+LDEPSIGLHQRDN +L+ TL  LR++ N
Sbjct: 479 LDRSADTLSGGEAQRIRLASQIGAGLVGVLYILDEPSIGLHQRDNDRLLGTLKHLRDIGN 538

Query: 539 TLVVVEHDEDTILNADYVVDMGPGAGVHGGDVVAVGTPTEISKNKDSLTGKYLSGELKIE 598
           T++VVEHDED I  ADYVVD+GPGAGVHGG +VA GTP E+  + DSLTGKYLSG +KI 
Sbjct: 539 TVIVVEHDEDAIRLADYVVDIGPGAGVHGGHIVAEGTPAEVMAHPDSLTGKYLSGRVKIA 598

Query: 599 IPKNRRKSDKFLKLS--NCRQNNLKNVSVEIPTGVFNVITGVSGSGKSTLIYENLYPALK 656
           +P  R   +K L L+    R NNL+NV +EIP G+   +TGVSGSGKSTLI   L+P   
Sbjct: 599 VPAKRTPRNKKLSLALKGARGNNLRNVDLEIPIGLLTCVTGVSGSGKSTLINNTLFPLSA 658

Query: 657 EKIKSEESVEELDFEDQLYENTKEKCNLEINSEIDKVVVIDQSPIGRTPRSNPATYTKVF 716
             +    ++E    +           +++    +DKVV IDQSPIGRTPRSNPATYT +F
Sbjct: 659 TALNGATTLEAAAHD-----------SIKGLEHLDKVVDIDQSPIGRTPRSNPATYTGLF 707

Query: 717 DKIRQVFAETKEAKIKGYGPGRFSFNVKGGRCENCQGDGVIKIEMNFLPDVFVECEECKG 776
             IR++FA   E++ +GYGPGRFSFNVKGGRCE CQGDG+IK+EM+FLPD++V C+ CK 
Sbjct: 708 TPIRELFAGVPESRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKS 767

Query: 777 ARYNHETLEVKYKGKSISDVLNMSVEEAREHFKNIPQISNKLKTLCDVGLGYIKLGQSST 836
            RYN ETLE+KYKGKSI + L M++EEAR  F  +P ++ KL+TL DVGL YIKLGQS+T
Sbjct: 768 KRYNRETLEIKYKGKSIHETLEMTIEEARVFFDAVPALARKLQTLMDVGLSYIKLGQSAT 827

Query: 837 TLSGGEAQRIKLTRELSKRATGNTIYLLDEPTTGLHFHDVKKLIDVLNSLVEKGNTVVVI 896
           TLSGGEAQR+KL+RELSKR TG T+Y+LDEPTTGLHF D+++L+DVL+ L + GNTVVVI
Sbjct: 828 TLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVI 887

Query: 897 EHNLDVIKCADHIIDLGPEGGEFGGKIIATGTPEEIAKCKLSHTGKFLKNILSKN 951
           EHNLDVIK AD ++DLGPEGG  GG+IIA GTPEE+++ K SHTG +LK +L ++
Sbjct: 888 EHNLDVIKTADWLVDLGPEGGSKGGQIIAVGTPEEVSEMKQSHTGFYLKPLLERD 942