Pairwise Alignments

Query, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis JJ

Subject, 952 a.a., excinuclease ABC subunit A from Herbaspirillum seropedicae SmR1

 Score =  976 bits (2523), Expect = 0.0
 Identities = 525/968 (54%), Positives = 675/968 (69%), Gaps = 37/968 (3%)

Query: 1   MKDIIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAY 60
           M++I I+GAR HNLKNI+L LPRN LIV+TG+SGSGKS++AFDT+YAEGQRRYVESLSAY
Sbjct: 1   MEEIRIRGARTHNLKNINLDLPRNKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYC 120
           ARQFL LM KPDVD IEGLSPAI+I+QK TS NPRSTVGTVTEI+DYLRLLYAR+G PYC
Sbjct: 61  ARQFLQLMEKPDVDMIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARVGTPYC 120

Query: 121 PEHNIR-IESQSPEKIAEKIEEEFSET-VTILSPIVRQKKGTYQKLFKDLNSEGFARIRV 178
           P+H    +E+QS  ++ + +     +T + I++P+V  +KG +  LF+++ ++GF R R+
Sbjct: 121 PDHPEHPLEAQSVSQMVDAVLALPEDTKLMIMAPVVANRKGEHADLFEEMQAQGFVRFRI 180

Query: 179 NG-----EIYRTDDEITLERYKKHDIEIVIDRLTPKDD-HSRLVEACERALERSGGLLIV 232
                  ++Y  DD   L++ +KH I++VIDR+  K D   RL E+ E AL  + G  I 
Sbjct: 181 QSGTGTAKVYEVDDLPKLKKTEKHTIDVVIDRVKVKADIKQRLAESFETALRLADGRAIA 240

Query: 233 TGTKNNEEFEKIYSSNLACPICGISFEELQPRMFSFNSPFGACEYCSGLGIKMEFDADLI 292
               + +E   +YS+  ACPICG S +EL+PR+FSFN+P GAC  C GLG    FD   I
Sbjct: 241 LEMDSGKEH--LYSNKFACPICGYSLQELEPRLFSFNNPMGACPECDGLGHIEFFDPKRI 298

Query: 293 IPDKNKCIADGAVALYRNFLDGYRSQHLAAVANHFGFTVLTPIKDLSKEQLDILMYGSPE 352
           +   N  +A GA+  +      Y  Q L ++A ++GF +  P + L  +    ++YGS  
Sbjct: 299 VAFPNLSLASGAIKGWDRRNQFY-FQMLTSIAAYYGFDLDVPFEQLDDKAQQAVLYGSGR 357

Query: 353 K-IHFKVSNGSGDTEWSQNKPWEGLIPQSIRLYNETKSEYRRKELEKFMKVSLCPKCGGK 411
           + I F   N  G T   ++  +EG++    R Y ET S   ++EL KF+    CP C G 
Sbjct: 358 QTIPFAYVNERGRTVVKEHT-FEGVVNNLQRRYRETDSMAVKEELAKFINEKQCPSCHGA 416

Query: 412 RLKDKALAVKI----EDKSIIDLTDLSISKAEEFFNNLKLTDKEYEIAKQVIKEIKSRLK 467
           RL+ +A  VK+    + ++I ++    + +   FF  LKLT  + EIA ++IKEI SRL 
Sbjct: 417 RLRVEARYVKVGSGKQQRAIYEVAATPLRETLSFFETLKLTGAKKEIADRIIKEIVSRLT 476

Query: 468 FLNDVGLGYLTLSRRSGTLSGGEAQRIRLATQIGSNLTGVLYVLDEPSIGLHQRDNQKLI 527
           FLN+VGL YL+L R + TLSGGEAQRIRLA+QIGS LTGV+YVLDEPSIGLHQRDN +LI
Sbjct: 477 FLNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLI 536

Query: 528 ETLHKLRNLDNTLVVVEHDEDTILNADYVVDMGPGAGVHGGDVVAVGTPTEISKNKDSLT 587
           +TL  LR++ NT++VVEHDED I  ADYVVDMG GAGVHGGDV+A G   +I KNK SLT
Sbjct: 537 DTLKHLRDIGNTVLVVEHDEDAIRTADYVVDMGIGAGVHGGDVIAHGPLPDILKNKKSLT 596

Query: 588 GKYLSGELKIEIPKNRRKSD--KFLKLSNCRQNNLKNVSVEIPTGVFNVITGVSGSGKST 645
            KYL+G L+I +PK R   D  + L +S    NNLKNV +E+P G+   +TGVSGSGKST
Sbjct: 597 AKYLNGSLEIAVPKKRTPCDESRMLTISGATGNNLKNVDLELPVGLLTCVTGVSGSGKST 656

Query: 646 LIYENLYPALKEKIKSEESVEELDFEDQLYENTKEKCNLEINSEI---DKVVVIDQSPIG 702
           L+ + LY               L     LY +  E    E    +   DKV+ +DQ+PIG
Sbjct: 657 LVNDTLY---------------LSAARHLYGSQTEPAAHEAIGGLEHFDKVIAVDQAPIG 701

Query: 703 RTPRSNPATYTKVFDKIRQVFAETKEAKIKGYGPGRFSFNVKGGRCENCQGDGVIKIEMN 762
           RTPRSNPATYT +F  IR +FA    AK +GY  GRFSFNVKGGRCE CQGDGVIK+EM+
Sbjct: 702 RTPRSNPATYTGLFTPIRDLFATVPMAKERGYSAGRFSFNVKGGRCEACQGDGVIKVEMH 761

Query: 763 FLPDVFVECEECKGARYNHETLEVKYKGKSISDVLNMSVEEAREHFKNIPQISNKLKTLC 822
           FLPDV+V C+ C G RYN ETLEV+YKGK+I+++L+M+VE+A E FK +P I+ KL+TL 
Sbjct: 762 FLPDVYVPCDVCHGKRYNRETLEVQYKGKNITEILDMTVEDAHEFFKPVPLIARKLQTLL 821

Query: 823 DVGLGYIKLGQSSTTLSGGEAQRIKLTRELSKRATGNTIYLLDEPTTGLHFHDVKKLIDV 882
           DVGLGYIKLGQS+TTLSGGEAQR+KL+ ELSKR TG T+Y+LDEPTTGLHFHD+  L+ V
Sbjct: 822 DVGLGYIKLGQSATTLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIDLLLKV 881

Query: 883 LNSLVEKGNTVVVIEHNLDVIKCADHIIDLGPEGGEFGGKIIATGTPEEIAKCKLSHTGK 942
           ++ L ++GNTV +IEHNLDVIK AD IIDLGPEGG  GG+I+A GTPEE+AK   S TGK
Sbjct: 882 IHRLRDQGNTVTIIEHNLDVIKTADWIIDLGPEGGAGGGRIVAAGTPEEVAKNPASVTGK 941

Query: 943 FLKNILSK 950
           +L  +L K
Sbjct: 942 YLAPLLKK 949