Pairwise Alignments

Query, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis JJ

Subject, 747 a.a., Signal transduction histidine kinase CheA (EC 2.7.3.-) from Pseudomonas fluorescens FW300-N1B4

 Score =  323 bits (828), Expect = 2e-92
 Identities = 159/383 (41%), Positives = 257/383 (67%), Gaps = 1/383 (0%)

Query: 536 ENSSSKKSQTVRVNIEKLDKLMNLVGEVVINRANFTQIATKYDLKELHNAVGRLNMLATE 595
           E  +S+   TVRV+  +LD++MN+VGE+V+ R    ++      + +  AV  L+++  +
Sbjct: 353 EKPASEAETTVRVDTARLDEIMNMVGELVLVRNRLVRLGLNSGDEAMSKAVSNLDVVTAD 412

Query: 596 LQEEVMGMRMIPVAFVFNRFPRTVRDTAKALDKEIDFEIEGSDIELDRTVLDELAEPLTH 655
           LQ  VM  RM P+  VF RFPR VRD A+ L KEI+ E+ G + +LD+ +++ LA+PL H
Sbjct: 413 LQTAVMKTRMQPIKKVFGRFPRLVRDLARQLKKEINLELVGEETDLDKNLVEALADPLVH 472

Query: 656 LIRNSLDHGIEHADERIKLGKPEKGILKLIATRQRDRVNIIIRDDGKGIDPDAMRKKAFE 715
           L+RNS+DHGIE   ER  +GKP  G + L A ++ D + + I DDGKG+D D +R  A +
Sbjct: 473 LVRNSVDHGIEEPAEREAMGKPRSGKVILSAEQEGDHILLSISDDGKGMDADVLRGIAVK 532

Query: 716 KGLYSKEEAEKLTDNEAVNVIFLPGFSTAEVVSDVSGRGVGMDVVRSKIESLGGSVTVNS 775
           KGL  K+ A++L++ +  N+IF PGFST   +SDVSGRGVGMDVV++KI  L G++ + S
Sbjct: 533 KGLMDKDAADRLSETDCFNLIFAPGFSTKTEISDVSGRGVGMDVVKTKIAQLNGTINIYS 592

Query: 776 EVGKGTEITLHLPLTMAIIQTLLIRLNEHIYALPLTSVLDVISVEKEQIKNLEGQEAIIY 835
             GKG++I + +PLT+AI+ TL++ L    +A PL +V ++  ++  +   ++GQE +I 
Sbjct: 593 TKGKGSKIVIKVPLTLAIMPTLMVMLGNQAFAFPLVNVNEIFHLDLSRTNVVDGQEVVIV 652

Query: 836 RNHILPVIWLKDAL-NTSGFSDSDDLYVVVVEKNKGKVGMILDEVIGRDEIVVKPLTGIL 894
           R+  LP+ +LK  L +++   +  + +VV++     ++G ++D+++G++E+V+KPL  +L
Sbjct: 653 RDKALPLFYLKRWLVSSAAHEEQREGHVVILSVGTQRIGFVVDQLVGQEEVVIKPLGKML 712

Query: 895 KNINGLAGATILGDGRVALILDL 917
           +   G++GATI GDGR+ALILD+
Sbjct: 713 QGTPGMSGATITGDGRIALILDV 735



 Score = 77.4 bits (189), Expect = 3e-18
 Identities = 40/120 (33%), Positives = 72/120 (60%), Gaps = 1/120 (0%)

Query: 5   EQYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHISS 64
           E+  + F+ EA E L+ L++ +VELE+ P+D++ ++N IFR  HT+KG A  L    +  
Sbjct: 7   EEILQDFLVEAGEILEQLSEQLVELESRPDDAD-LLNAIFRGFHTVKGGAGFLQLNELVE 65

Query: 65  LTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVDVDSLVEVIK 124
             H  E++ D +R G+ +V+ E++D++ + LDA+  M SEV +    T+   + L  + +
Sbjct: 66  CCHIAENVFDILRKGERRVDSELMDVVLEALDAVNGMFSEVRERSPITAATPELLAALAR 125