Pairwise Alignments

Query, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis JJ

Subject, 686 a.a., CheA signal transduction histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  293 bits (749), Expect = 3e-83
 Identities = 168/465 (36%), Positives = 271/465 (58%), Gaps = 10/465 (2%)

Query: 461 LETEPPEEKIQEG-NLGGNTVTIYYDSDESEDDIKEIISKTPEITEFLVNVQKNTNNSKD 519
           L T+ P  +++E      +   I Y +     +  EI ++         ++Q +T  +  
Sbjct: 207 LTTDQPLSRLKEAFEWVEDECDIDYQAQPKASEASEITTEKEIEATAESDIQASTQTTTP 266

Query: 520 NTKIKNTVDATSKKQAENSSSKKSQTVRVNIEKLDKLMNLVGEVVINRANFTQIATKYDL 579
            +       + ++    +S ++ + ++RV+IEK+D L+N+VGE+VI +A   QI  + ++
Sbjct: 267 ASVQPEKPASQTRPSVVSSKTQDAGSIRVSIEKIDLLINMVGELVITQAMLGQIGQQEEM 326

Query: 580 KE-----LHNAVGRLNMLATELQEEVMGMRMIPVAFVFNRFPRTVRDTAKALDKEIDFEI 634
                  +   + +L     +LQE VM +RM+P++F FNRFPR VRD  + L K+++  +
Sbjct: 327 TPESFITMKQGLEQLASHTRDLQESVMQIRMLPISFAFNRFPRLVRDIGQQLGKKVELIL 386

Query: 635 EGSDIELDRTVLDELAEPLTHLIRNSLDHGIEHADERIKLGKPEKGILKLIATRQRDRVN 694
           +G D ELD+TV++++ +P+ HL+RNSLDHG+E  + R + GKPE G L L A  Q   + 
Sbjct: 387 KGEDTELDKTVMEKIVDPMVHLVRNSLDHGLETPEVRRQKGKPETGTLTLNAFHQGGNII 446

Query: 695 IIIRDDGKGIDPDAMRKKAFEKGLYSKEEAEKLTDNEAVNVIFLPGFSTAEVVSDVSGRG 754
           I I DDG G++   +  KA  KGL   +  E+L++     +IF PGFSTAE VSD+SGRG
Sbjct: 447 IEIIDDGAGLNTQKILDKARAKGLVGSD--EELSEEAIHQLIFKPGFSTAETVSDLSGRG 504

Query: 755 VGMDVVRSKIESLGGSVTVNSEVGKGTEITLHLPLTMAIIQTLLIRLNEHIYALPLTSVL 814
           VGMDVV   I  L G++ + S   KG+  T+ LPLT+AI+   L+R+  H Y +PL ++ 
Sbjct: 505 VGMDVVLRNIHELNGTIELKSTQDKGSRFTIRLPLTLAILDGQLVRIGTHTYVVPLVAIH 564

Query: 815 DVISVEKEQIKNL-EGQEAIIYRNHILPVIWLKDAL-NTSGFSDSDDLYVVVVEKNKGKV 872
           + + V    I  L E  E I  R+  LPV+ + +A  + +      D  V+VV+ N  KV
Sbjct: 565 ESLEVPAAHINRLSEEHEVIRLRDEYLPVLKVYEAFHHEADAKQIKDGLVMVVDANNDKV 624

Query: 873 GMILDEVIGRDEIVVKPLTGILKNINGLAGATILGDGRVALILDL 917
           G+++DE++ + ++V+K L      + G++GATILGDG VALI+D+
Sbjct: 625 GLLVDELLSQQQVVIKSLEDNYSKVAGISGATILGDGTVALIIDI 669



 Score = 75.9 bits (185), Expect = 8e-18
 Identities = 37/103 (35%), Positives = 63/103 (61%), Gaps = 1/103 (0%)

Query: 3   DMEQYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHI 62
           D+ Q+ ++F  E+ E L+S+   +++L+    D E I N IFR+AH++KG + T GF  +
Sbjct: 4   DLSQFSQVFFEESLEGLESMESELLKLDIAAPDPEAI-NTIFRAAHSIKGGSGTFGFNQV 62

Query: 63  SSLTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEV 105
           ++ TH +E +LD IRDG+ ++     D+L   +D L  M+  V
Sbjct: 63  ANYTHLLETLLDEIRDGRREMTSHHQDILLLSVDLLRNMLDAV 105