Pairwise Alignments

Query, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis JJ

Subject, 758 a.a., chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  321 bits (822), Expect = 1e-91
 Identities = 164/396 (41%), Positives = 264/396 (66%), Gaps = 7/396 (1%)

Query: 529 ATSKKQAENSSSKKSQ---TVRVNIEKLDKLMNLVGEVVINRANFTQIATKYDLKELHNA 585
           A  K  A  SS+   Q   TVRV+  +LD++MN+VGE+V+ R     +    D +E+  A
Sbjct: 351 APVKAAAAASSTSVPQGETTVRVDTARLDQIMNMVGELVLVRNRLVSLGISRDDEEMSKA 410

Query: 586 VGRLNMLATELQEEVMGMRMIPVAFVFNRFPRTVRDTAKALDKEIDFEIEGSDIELDRTV 645
           +  L+++  +LQ  VM  RM P+  VF RFPR VRD A+ L+KEID  + G + +LD+ +
Sbjct: 411 LANLDLVTADLQGAVMKTRMQPIKKVFGRFPRVVRDLARTLNKEIDLVLVGEETDLDKNL 470

Query: 646 LDELAEPLTHLIRNSLDHGIEHADERIKLGKPEKGILKLIATRQRDRVNIIIRDDGKGID 705
           ++ LA+PL HL+RNS+DHGIE  ++R   GKP  G++ L A+++ D + + I DDG G+D
Sbjct: 471 VEALADPLVHLVRNSVDHGIEMPNDREASGKPRTGVITLSASQEGDHILLKIEDDGAGMD 530

Query: 706 PDAMRKKAFEKGLYSKEEAEKLTDNEAVNVIFLPGFSTAEVVSDVSGRGVGMDVVRSKIE 765
           P+ +++ A ++G+  ++ A ++TDNEA N+IF PGFST   +SD+SGRGVGMDVV+++I 
Sbjct: 531 PEKLKQIAIKRGVLDEDSAARMTDNEAYNLIFAPGFSTKVEISDISGRGVGMDVVKTRIT 590

Query: 766 SLGGSVTVNSEVGKGTEITLHLPLTMAIIQTLLIRLNEHIYALPLTSVLDVISVEKEQIK 825
            L G+V ++S  GKGT + + +PLT+AI+ TL++ + + ++ALPL+SV ++  ++  +  
Sbjct: 591 QLNGTVHIDSMKGKGTILEIKVPLTLAIMPTLMVDVAKQVFALPLSSVNEIFHLDLTKTN 650

Query: 826 NLEGQEAIIYRNHILPVIWLKDAL--NTSGFSDSDDL--YVVVVEKNKGKVGMILDEVIG 881
            ++GQ  +I RN  +P+ +L+  L  N + F   D    +VV+V+    ++G ++D +IG
Sbjct: 651 IVDGQLTVIVRNKAVPLFYLEHWLHRNKTNFKHGDKKHGHVVIVQLGIMQIGFVVDALIG 710

Query: 882 RDEIVVKPLTGILKNINGLAGATILGDGRVALILDL 917
           ++E+V+KPL  +L    G+AGATI  DG +ALILD+
Sbjct: 711 QEEVVIKPLGALLHGTPGMAGATITSDGGIALILDV 746



 Score = 82.4 bits (202), Expect = 1e-19
 Identities = 72/309 (23%), Positives = 135/309 (43%), Gaps = 24/309 (7%)

Query: 5   EQYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHISS 64
           E+  + F+ EA E L+ L + +V LEN P+D++ ++N IFR  HT+KG A  L    +  
Sbjct: 7   EEILQDFLIEAGEILELLQEQLVALENNPDDTD-LLNAIFRGFHTVKGGAGFLSLTPMVD 65

Query: 65  LTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVDVDSLVEVIK 124
           + H  E+  D +R GK  V  E++D++ + +DA+ TM ++   GE     D   L     
Sbjct: 66  VCHEAENTFDLLRTGKRSVTAELMDIILQAVDAINTMFAQTQQGEQQDPADAALL----- 120

Query: 125 SVKEKYLSGENPKEDPLDCSDPNEVAKKQVEEKTV---NNISSNSGSIHLVDESSIILIE 181
             K K LS   P         P+E+ ++  E + +     +      + +V+E  +  ++
Sbjct: 121 -AKLKLLSSGEPL--------PSELGQRAPEPELIPEPEPVIETIVEVAVVEEMPVETVD 171

Query: 182 GQSNNFVVEKPENLDSVLNQMHESASALLTILDALEYSELKDTVKNIDELSTAMLNETVA 241
             S++         +++L+ +H +          +  + + + VK   + +T+  +    
Sbjct: 172 SASSSIDEINDAEFEALLDALHGNGKGPGVATSNVAAASISNAVKPPAQAATSGDD---- 227

Query: 242 ITENSLSVLKSALSTMQQIAKVVETGSSSNYDYSELNEKISITLSETVGESVDDKEIILD 301
           IT++    L   L    + +  VE    +      +    S T+      SVD  EI  D
Sbjct: 228 ITDDEFEALLDELHGSGKFSGKVEESVPAKLKAEVVAAPASATV--PTATSVDSDEITDD 285

Query: 302 HTIFNLEEV 310
                L+E+
Sbjct: 286 EFERLLDEL 294